Protein Info for PS417_19165 in Pseudomonas simiae WCS417

Annotation: insecticidal toxin complex protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 809 PF03538: VRP1" amino acids 24 to 292 (269 residues), 111.5 bits, see alignment E=3.3e-36

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UIC4 at UniProt or InterPro

Protein Sequence (809 amino acids)

>PS417_19165 insecticidal toxin complex protein (Pseudomonas simiae WCS417)
METLNRSLLARLVEQPVTPSVGKVDFTTAMDLLRFTSVFDIVELPEAEFIRRLAQYNDDD
GAQAYTNACSYTTQLQWLYDQQPLNTPHARSKRDLEPSAPSLLNEDWGNACHPDAIAAID
SPVAYLRALFLFATQLEKNGKGTKTKILLSQRRPELKNLPIDHDTTFAQRPLLTLIDDML
RKQIKLHHPQEKVRALLSKQRYPLTLPYHHHHLQCRLGLSGTQHALGELNYRISKRLPFD
DAGSTRYGTVKARNNDVQCLLSELNPQQQELLTQPHVTGSTLFETYFGRPSAPENLDDFL
KCTALDTTQLQALLAQNSFAAHASLSASKQLLTYGARYVNGTDRLPKLEVGQSADGKTAT
LLNTSLDRFDRLHRMIRLQKWIDLPFAELDTLIVSTMMLEGTANADLQISHTTLRALGVY
RYLRGRYRLKPLEFSAWLDRLPVQASANEPALFDQVFNRTLLSERPLPLDDQTFDSHTRQ
QLCAALALSDTPDSLQLLTDAFPNPLHRNLVTYSGIYRLARIAQVFGLSVLHCKQLADLL
GPSTWSKLANPTLSTEMDFLDVLMRLDWAVTWLRDNDTSVTQLRQRLLLEPVADNPALKR
WVDLLPKGLEACIQQFLENPAPALYSNELKRYYRLHFKKTDTEPTHLILLAPDITTLLPL
PVNSTSLRQLLINPHWLDSEKSPTELVELSLGTLYLLQRFRDCCERYGLAQDSLLEYFES
ANSNGSQTLDTRLSQWLGWDEKELRALTETLPTHRVKSMDQLDWIMRCRQACTITRLASQ
MLLDASERDTASDFNKWKLVGEAIIAARQ