Protein Info for GFF3724 in Sphingobium sp. HT1-2

Annotation: Glucans biosynthesis protein D precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 493 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF04349: MdoG" amino acids 30 to 489 (460 residues), 486.4 bits, see alignment E=5.6e-150

Best Hits

KEGG orthology group: K03670, periplasmic glucans biosynthesis protein (inferred from 71% identity to sjp:SJA_C1-30870)

Predicted SEED Role

"Glucans biosynthesis protein D precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (493 amino acids)

>GFF3724 Glucans biosynthesis protein D precursor (Sphingobium sp. HT1-2)
MIDRRALIAASGAALLLPRPALSQARNDRFSWDGIIAMAQKLARAPFAETPPNPVAAKVG
YNQMHQARFRDEKTIWGDLPGDTGVRLFPLSGTAQQPVQIALVDKGVATPLRYDPAMFET
PDGNAVADLGPDAGYAGFRIMNARRDGDWLSFLGASYFRAPGPTKQFGLSARAIAINTSI
SGKEEFPRFTHFWLERTGDSSVTVYALLDGASITGAFRFVNRLGAKGVTQDVTAALFPRR
PIPELGLMAMTSMFWYDEAHRTKGTDWRPEIHDSDLLSIASADGSAQARPLVNPSVPRVD
GFAETSPKGFGLLQRDRNFDHYQDDGVYYDRRPSLWATPSAPLGAGQVRLYTFPTDSEYT
DNVCAYWTPAKAARPGSRIDAAYRLDWTADRAPAGSNLAIVQAVWRGRGDEAGVERLVID
FAGLPTDAKPELWTDIGNGTIVKKGGYPVLGQAGLYRVAIDIRKSGDRAADIRVQLRSGN
RAFSEYVHYPIGA