Protein Info for PS417_19040 in Pseudomonas simiae WCS417

Annotation: aspartate racemase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 483 PF01177: Asp_Glu_race" amino acids 33 to 229 (197 residues), 63.6 bits, see alignment E=1.2e-21 amino acids 247 to 471 (225 residues), 145.4 bits, see alignment E=1.1e-46 TIGR00035: aspartate racemase" amino acids 244 to 475 (232 residues), 183.8 bits, see alignment E=1.9e-58

Best Hits

KEGG orthology group: K01779, aspartate racemase [EC: 5.1.1.13] (inferred from 82% identity to pba:PSEBR_a1787)

Predicted SEED Role

"Aspartate racemase"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 5.1.1.13

Use Curated BLAST to search for 5.1.1.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U9I5 at UniProt or InterPro

Protein Sequence (483 amino acids)

>PS417_19040 aspartate racemase (Pseudomonas simiae WCS417)
MTTTSRLGIVGGLGSLAGGDLFYKLVKSRAVLEDQDRYHFLFEQHPFKDVRLPLDRHASM
TARKFYVFQVCKTFEDSGVDAVLLPCFASQTFREEIQQELGIPVLDMMQALVRHILRCVA
PGTTLGVIASDFVRHCGLFEKHLGQHFNLVYPEDHAQVALMEAMYGVNGIKDGHLDGVPL
ESVYQACLSLQGQGATVIVPGMTELSLVCGDLQRRGISVLDINQIYAEFATQADGPTRQS
PFKLGIVGGVGPAATVDFMGKVVAHTPAGKDQDHIKMVVEQNPQIPDRTANLLRDETDPT
LALFATCKRLESAGAQAIAIPCNTAHAFVERIQAHLRVPIVNMLSETVEWIVHTYGRGQA
VGLLATSGTLQSQVYHQAARRSGLELITPGFDYQALVMEAIYGERGIKAGFTQGVCREQL
LLAAEHLCEQGAKVLILGCTELPLVLAHCDVFEIGAHRVALVDPTTVLARRCVSLSSGAY
RIG