Protein Info for GFF3717 in Variovorax sp. SCN45

Annotation: Putative aminoacrylate peracid reductase RutC @ RidA/YER057c/UK114 superfamily protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 TIGR03610: pyrimidine utilization protein C" amino acids 1 to 127 (127 residues), 240.7 bits, see alignment E=1.6e-76 PF01042: Ribonuc_L-PSP" amino acids 14 to 125 (112 residues), 105 bits, see alignment E=1.4e-34

Best Hits

Swiss-Prot: 84% identical to RUTC_VARPS: Putative aminoacrylate peracid reductase RutC (rutC) from Variovorax paradoxus (strain S110)

KEGG orthology group: K09021, UPF0076 protein RutC (inferred from 84% identity to vap:Vapar_4840)

MetaCyc: 70% identical to 3-aminoacrylate deaminase (Escherichia coli K-12 substr. MG1655)
RXN0-6452

Predicted SEED Role

"Bona fide RidA/YjgF/TdcF/RutC subgroup"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (130 amino acids)

>GFF3717 Putative aminoacrylate peracid reductase RutC @ RidA/YER057c/UK114 superfamily protein (Variovorax sp. SCN45)
MPKQAIIPPGTGVPLAPYVPGTLADGVLYVSGTLPFDKDNNVVHVGDASAQARHVLTIIQ
GVVEAAGGTMDDVTFNQIMLKDWADYAKINAVYAEFFPGTKPARYCIQCGLVKPDALIEI
ASIAHIGKKG