Protein Info for GFF3713 in Xanthobacter sp. DMC5

Annotation: Adaptive-response sensory-kinase SasA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 549 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 197 to 219 (23 residues), see Phobius details PF00672: HAMP" amino acids 219 to 266 (48 residues), 37 bits, see alignment 5.1e-13 PF00512: HisKA" amino acids 306 to 373 (68 residues), 49.8 bits, see alignment E=4.2e-17 PF02518: HATPase_c" amino acids 420 to 532 (113 residues), 83.4 bits, see alignment E=2.4e-27

Best Hits

KEGG orthology group: None (inferred from 71% identity to xau:Xaut_1804)

Predicted SEED Role

"FIG00799423: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (549 amino acids)

>GFF3713 Adaptive-response sensory-kinase SasA (Xanthobacter sp. DMC5)
MWRATGGRQAGGAMRSIRFKLAALAGATAILAVLAGVSVLIALRAVDGALEAAVSAQQRL
DVLTEISARLSDFGLAAIAATESPTASAGRLEDARSRVSALLEASTVKAVQAAPDASSGL
RPQERLLARLRADFISLDRQITAATRDPDTMRRGDRVRGSLNAFAASAGPTLSLLVESER
RGVTAAREEAVALADRLRIGAVAIALAVFAAALVLYRALAQPLLGRLKEIDRAAAAIGRG
DLSARLAIGQRDELGVLMARFNRMAALLARRERKVAQDRAELEKTIADRTADLTEANARL
GAIDASRRRFFTDVSHELRTPLTVIIGECDVTQRAPAIPEALSRSVLTTIRKRAGMLHRR
VEDMLRVARSESGEIELVFQDTPLAPLLADAVAGLEPVARRQGVALVLHAPEPGLLVHAD
REWLRQVVEGLIDNALRHGRPLTRVTVAVDHGADAEGQAVDIVSITDDGCGIPPEARTRL
FERFARGGPLGGAEGFGLGLALADWVVTRHGGRITLGDGEKGGTRVAIALPQAAAAAPSE
PAAESGPTV