Protein Info for GFF37 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Alkaline phosphatase (EC 3.1.3.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1081 PF03372: Exo_endo_phos" amino acids 677 to 942 (266 residues), 33.9 bits, see alignment E=2.9e-12 PF00353: HemolysinCabind" amino acids 957 to 990 (34 residues), 38.7 bits, see alignment (E = 7.7e-14) TIGR03661: type I secretion C-terminal target domain (VC_A0849 subclass)" amino acids 1001 to 1072 (72 residues), 22.8 bits, see alignment 8.2e-09

Best Hits

Predicted SEED Role

"Alkaline phosphatase (EC 3.1.3.1)" in subsystem Phosphate metabolism (EC 3.1.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.3.1

Use Curated BLAST to search for 3.1.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1081 amino acids)

>GFF37 Alkaline phosphatase (EC 3.1.3.1) (Hydrogenophaga sp. GW460-11-11-14-LB1)
VTHALHHLTQSGAAVALHCAPFNVLPNHTNQVLKMKPTLDPRCPSVQRRLPACLMALGLL
TASAVWADTAPQNLPFAQDWSNAGLITANDSWSGVPGIVGYRGDDLVTSTGANPQTVLGV
GSQVVNVLANQTNPNTLTNGGVAEFAIANPVVALNGSGTADAPNIVIHLNTTGQQDIRVA
YTLRDLDGSADDAVQPVALQYRVGNTGNFINVPAGFVADATTGPNLANATFPVSVVLPAA
ANNQAQLQVRIITTNAVGNDEWVGIDDIAITGTPVGGSINQPIATACPAGTAFDQGVGGT
LALSATDSDSVVNGITLGNGTPAGIALDGFQPAVADGGTATASLVVAGSLAAGSYPVQVT
FSNNELQTALCNLTVTVNGSLTIPQVQGSGALSPLEGQSATVRGVVTLVTNNGFFLQDPV
GDGDASTSDGLFVFTSSTPGANVVAGNELSVTGTVTEYRTGTGAQAVARPLTQLTAPTIA
LLSTGHTVAPTVITLPEVAEGELERYEGMLVHIATPLTASQNFFQGRYGQVTLSAEGRLE
KPTNRHPAGSVEALAMEDGNARRRILLDDGLSIQNPDPTPYLAADNTLRAGDVLPSGVTG
VIDYGLATNLTDGISDYKIHPTEEVVFSRENPRPGTPAAVGGNVRVGAFNVLNYFTTIDQ
AGASCYPGGGRSDCRGADSAAEFTRQRDKIVKAIVGLNADVVGLMEIENNGNTAVQNLVS
GLNAVAGANTYATVAMPTGGSGTDAIRVAMIYKPGKLSLVGQARSDTDSVHNRPPLAQTF
AAANGERFSVVVNHFKSKGSCPSGSGADADAGDGQGCWNATRVEQAQALLGFVSQIQSTS
GSNDVMVVGDINAYGKEDPILEMTNNGLVDEIARFNAFGYSYVFDGEAGYLDHGLATASL
SAKVTGAIHWRINADEPSVIDYNTEFKLSDYYTNTVYRSSDHDPVLVGLALRKAVNGTAS
RDTLVGTAGDDVITGGPGADVLTGGAGADVFVYTDLRDAGDRITDFVPGTDRIDLVALLQ
SIGYTGGNAIADGVVRLVDSAAGLVVQIDADGSAGPLAARPLLTLTGVSAAQIVAARDLG
L