Protein Info for GFF3694 in Variovorax sp. SCN45

Annotation: Phosphoesterase, PA-phosphatase related

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 237 transmembrane" amino acids 34 to 54 (21 residues), see Phobius details amino acids 74 to 96 (23 residues), see Phobius details amino acids 106 to 125 (20 residues), see Phobius details amino acids 152 to 170 (19 residues), see Phobius details amino acids 180 to 198 (19 residues), see Phobius details amino acids 204 to 221 (18 residues), see Phobius details PF14378: PAP2_3" amino acids 89 to 217 (129 residues), 45.3 bits, see alignment E=9.4e-16 PF01569: PAP2" amino acids 126 to 223 (98 residues), 47.1 bits, see alignment E=2e-16

Best Hits

KEGG orthology group: None (inferred from 79% identity to vpe:Varpa_5501)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (237 amino acids)

>GFF3694 Phosphoesterase, PA-phosphatase related (Variovorax sp. SCN45)
MTSTTTSNNDTGASGSTRRTWPAALWRRCITLFPLKLVGNTVATLGFFPLYFWIAKNAGQ
AWVLPLTAFDRAIAFLPALLPVYLSLWGYIALPVLLAKDMRELSRFSLGCAAMTLLALLV
FWFMPTAIPNFTVATTPGTSLQFLKMVDSAGNAFPSLHVSFSVFACVMLARQLREVGAPA
WLRVVNVAWAAGIVYSTMAVRQHVLVDVLGGLALGVLLGVATRQREAAATAVLARPA