Protein Info for PS417_01880 in Pseudomonas simiae WCS417

Annotation: poly(3-hydroxyalkanoate) granule-associated protein PhaI

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 140 PF05597: Phasin" amino acids 13 to 137 (125 residues), 141.5 bits, see alignment E=7.9e-46 TIGR01837: poly(hydroxyalkanoate) granule-associated protein" amino acids 19 to 138 (120 residues), 128.4 bits, see alignment E=7.3e-42

Best Hits

KEGG orthology group: None (inferred from 96% identity to pfs:PFLU0391)

Predicted SEED Role

"polyhydroxyalkanoate granule-associated protein PhaI" in subsystem Polyhydroxybutyrate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TYS8 at UniProt or InterPro

Protein Sequence (140 amino acids)

>PS417_01880 poly(3-hydroxyalkanoate) granule-associated protein PhaI (Pseudomonas simiae WCS417)
MAKVILKKKIDAQTTTLSEVKSYARKIWLAGLGAYAKVGSEGGDYFKELVKAGQHVESKG
KKVAVEQLEAANSQIDQVKSNVSSVKGLVEVQLDKVEKAFDTRVASALNRIGIASKHDVE
TLSAKLEELTTLLERVARKH