Protein Info for GFF3678 in Xanthobacter sp. DMC5

Annotation: Chromate transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 88 to 116 (29 residues), see Phobius details amino acids 123 to 149 (27 residues), see Phobius details amino acids 161 to 192 (32 residues), see Phobius details amino acids 214 to 233 (20 residues), see Phobius details amino acids 245 to 266 (22 residues), see Phobius details amino acids 280 to 304 (25 residues), see Phobius details amino acids 312 to 338 (27 residues), see Phobius details amino acids 351 to 374 (24 residues), see Phobius details amino acids 384 to 410 (27 residues), see Phobius details PF02417: Chromate_transp" amino acids 19 to 190 (172 residues), 124.9 bits, see alignment E=1.7e-40 amino acids 242 to 407 (166 residues), 118.7 bits, see alignment E=1.4e-38 TIGR00937: chromate efflux transporter" amino acids 24 to 407 (384 residues), 323.9 bits, see alignment E=1e-100

Best Hits

KEGG orthology group: K07240, chromate transporter (inferred from 70% identity to xau:Xaut_1773)

Predicted SEED Role

"Chromate transport protein ChrA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (414 amino acids)

>GFF3678 Chromate transport protein (Xanthobacter sp. DMC5)
MADEAVETPEENSAGSPGEVFRAFLKLGLMSFGGPIAHLGYFRAELVERRRWIDDAGYAD
LVALCQFLPGPASSQLGFALGLIRGGGFLGGLAAWAGFTLPSAILLAALALLSSYVGMSA
LSGGVIGGILHGLKLVAVAVVAQAVWGMARTLAPDQPRAGIALSAIVMVTLAAGSFGQVA
AIAMGAIAGLVLCRDETPAETPASGHLPVPLSRRTGVILLVVFALLLVLPPVFKAASPYI
GVFDSFYRSGALVFGGGHVVLPLLQAEVVTTGWVLPSQFLAGYGLAQAVPGPLFTFAAWL
GAVMAPPAGGVTGAAVALVAVFLPGLLLVTGMLPFWGALRGQPLAQAAMRGANAAVVGIL
GAALYTPVFTGAVLRPMDFAAAVTGFLLLTVWKVPPLAVVVVLAVLGPFLTGLY