Protein Info for GFF3667 in Variovorax sp. SCN45

Annotation: Uncharacterized MFS-type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 transmembrane" amino acids 18 to 42 (25 residues), see Phobius details amino acids 48 to 70 (23 residues), see Phobius details amino acids 79 to 98 (20 residues), see Phobius details amino acids 109 to 130 (22 residues), see Phobius details amino acids 141 to 161 (21 residues), see Phobius details amino acids 168 to 186 (19 residues), see Phobius details amino acids 222 to 244 (23 residues), see Phobius details amino acids 256 to 277 (22 residues), see Phobius details amino acids 289 to 307 (19 residues), see Phobius details amino acids 313 to 335 (23 residues), see Phobius details amino acids 347 to 367 (21 residues), see Phobius details amino acids 373 to 398 (26 residues), see Phobius details PF07690: MFS_1" amino acids 20 to 295 (276 residues), 68.3 bits, see alignment E=3e-23 amino acids 226 to 406 (181 residues), 45.5 bits, see alignment E=2.6e-16

Best Hits

KEGG orthology group: None (inferred from 85% identity to vpe:Varpa_5558)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (422 amino acids)

>GFF3667 Uncharacterized MFS-type transporter (Variovorax sp. SCN45)
MTAPAAPSRRSLRALDALAFFAPDIQGGVGPFLIVFMAGTLAWDPQRIGTVMFVSALVGL
LVQAPAGALIDSARHKPRWIAGAIALIAVCLVVMANWPGYAVILAGQSLIGAAGTLVAPA
IAAVSLGMVGRAGLDARVGRNAAITASGTVLWALGTGWVGHAFGPHAMFFYAVAMALPTI
AAAMLIRKRDVDPKLARGADADADHEEADAPHSKARWYDRRFIVLLTCAFLFHLANAAML
TLVAQKVGAQAGTSATLWLSGGVIVTQLVTVPIALAVGRWAPRLARKPIFLAGFAVLPVR
GLLYLLADSPAALLSLQVLDGIGAGIFGVMLTLMIGDLTRGSGHFNFALGIGAACVGLGA
ALSNLVAGTVAHLAGYGTAFVMLAGIAAGALTLFALAMPETRDRRRSMANAPAASALTTA
AP