Protein Info for GFF3632 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Regulator of nucleoside diphosphate kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 133 PF01272: GreA_GreB" amino acids 47 to 120 (74 residues), 68.6 bits, see alignment E=1.8e-23

Best Hits

KEGG orthology group: K06140, regulator of nucleoside diphosphate kinase (inferred from 62% identity to pna:Pnap_4969)

Predicted SEED Role

"Regulator of nucleoside diphosphate kinase" in subsystem Transcription factors bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (133 amino acids)

>GFF3632 Regulator of nucleoside diphosphate kinase (Hydrogenophaga sp. GW460-11-11-14-LB1)
MHKTLTGERLLTELDFTRLNNLRGGKMPSELTDALDTLDLVPSREVPANVVTMYSQVILE
DVATGKRQKLTLCYPADAEPHLGFISVLSPVGASLLGQRAGAIARWRTPNGDACEAEIVE
LLFQPEASGDYTT