Protein Info for PS417_18570 in Pseudomonas simiae WCS417

Annotation: peptidoglycan-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 853 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 418 to 439 (22 residues), see Phobius details amino acids 601 to 621 (21 residues), see Phobius details TIGR03505: FimV N-terminal domain" amino acids 170 to 241 (72 residues), 88.7 bits, see alignment E=1.7e-29 TIGR03504: FimV C-terminal domain" amino acids 809 to 852 (44 residues), 68.7 bits, see alignment 3.4e-23

Best Hits

KEGG orthology group: K07288, uncharacterized membrane protein (inferred from 93% identity to pfs:PFLU4190)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TZB2 at UniProt or InterPro

Protein Sequence (853 amino acids)

>PS417_18570 peptidoglycan-binding protein (Pseudomonas simiae WCS417)
MVQVRKLVLAIAAASALSSGMAQALQLGEMTLKSKLNQPLAVEIELLDVGGLTASEITPS
LASSQAFVDAGVDRQAFLDDLTFTPVVNPSGRSVVRVTSSKPLPDSYVRFLLQVQWPNGR
LMRDYSVLLDPAKFDQPAPTTAAPAPRLAAPASTAPAVSKPAQHTTTSRDTLWEIAAKNR
NGGSVQQTMLAIQALNPDAFIDGNINRLKTGQVLRLPDPVQSTSLPQPQAIAEVSAQNAA
WRQGRRAANNPAAGKQQLDATKRTQAGNAPASTGAKDNLSLVSAEAAKKGVKGKAGDSAA
LSDKLAMTQEQLDTTRRDNEELKSRAADLQSQLDKLQKLIQLKNDQLARLQAEKGTPAAP
ATAAMPAQLAGEPVAAPAVPDAATATPAPAAPAPEPVKADATPASAEGKFNDLLTNPVVL
GVIGGAAGLLVLLLLLLWVRHRNARREEEKHLRMARALAEEPVFTSNIDQDLPPDSFEGL
EVPPPNVKLAAAPTPTPTVEPAVAVPTVASVLAPLAVAVAPVNASDALAQAQSLVDRGHL
NQAADVLEQAIKQEPKRSDLRLKLMEVYGLQNNKDGFVTQERQLVANGENHAQVEQLKSR
FPAMAVLAAGVSAAVAAAALDAQYVKDLLEDKPAPAATEPEAFDTDFDLSLDDLEEASPA
EAKDDQQTFESLLQQQTEAKAAPDDLSDFDLDLQLDGPASAQSDDDFLSGLEEQMKDVPP
VEPPTLAPTALDDFDLPEDFDLSLADEPEAAAKPDAFASELDDVNAELDRLSQSLEHPSI
EPSFTAEDAAQGDDEPEFDFLSGTDEVATKLDLAQAYIDMGDADGARDILSEVLTEGDEA
QRGEAKEMLGRLV