Protein Info for GFF362 in Sphingobium sp. HT1-2

Annotation: Sensory box/GGDEF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 766 transmembrane" amino acids 24 to 44 (21 residues), see Phobius details amino acids 50 to 71 (22 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 117 to 135 (19 residues), see Phobius details amino acids 140 to 157 (18 residues), see Phobius details amino acids 163 to 184 (22 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 213 to 328 (116 residues), 26.4 bits, see alignment E=6.3e-10 PF00989: PAS" amino acids 213 to 322 (110 residues), 26.5 bits, see alignment E=1.1e-09 PF08448: PAS_4" amino acids 216 to 326 (111 residues), 29.4 bits, see alignment E=1.6e-10 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 334 to 490 (157 residues), 121.4 bits, see alignment E=3.2e-39 PF00990: GGDEF" amino acids 337 to 490 (154 residues), 141.8 bits, see alignment E=3.4e-45 PF00563: EAL" amino acids 513 to 745 (233 residues), 255.3 bits, see alignment E=1e-79

Best Hits

KEGG orthology group: None (inferred from 69% identity to sjp:SJA_C1-33330)

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (766 amino acids)

>GFF362 Sensory box/GGDEF family protein (Sphingobium sp. HT1-2)
MGLARLVDEADMRVLTAQLQSADSVALLRLAMNVFGLLFLWRVFGSHVSATVMIGWSVAL
IGAVAISALLIHRRKIGAGGVPQARDLRRHALTGLLHGLVWAACMTLFSRGEGAEHLVAL
WTLISCIMVCGAISYAATPLAAIAFLVPCIVGLSAMFDGETLLPLRALATSYALSLLVGC
LIYARTFARQHSTTVQLAEQTEVVSLLLREYEQGASDWLWQTDALRRISGVSQRFAESVG
MTPQALEGAPLVQVLAGAGWESGRFASSLHSLADHLKRRESFSNLALPVDVQGRTRWLEL
SASPRYDDNGNFQGFRGVGSDITVQRESADKIAQLARFDTLTGLPNRAHLRDALDQAMAD
TGNRRPGCAFLMLDLDRFKAINDSLGHQVGDQLLSQVAQRLRHVCGGAGFCGRIGGDEFG
VVIARIDDDRAVARLSIAIIDALSAPYQIDQHVLHVGASVGSAVSPIDGHQSESIIRSAD
LALYRAKDEGGGVHCPYEPQLHAKAEERQRLEQALREALEKDQLHLLYQPVVDATSGVIT
GFEALARWTHPELGPIPPSKFVPVAEEARLIGPIGEWVLRTACREAMRWPAHIRVAVNVS
AEQLHQSNFISSVINALAQSGLDARRLELEVTESVFMHEDDGALRVLDQLQAMGIQLSLD
DFGTGYSSLGYLSRTRFNTIKIDRSFVVGAAHNTPENLAIIRAVVTLAESLGMSTTAEGV
ETATELDMVRRLGCKKVQGYYYGRPMLPQDAARLFPDPPAQACAVG