Protein Info for GFF360 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 573 transmembrane" amino acids 23 to 47 (25 residues), see Phobius details amino acids 70 to 92 (23 residues), see Phobius details amino acids 104 to 122 (19 residues), see Phobius details amino acids 154 to 172 (19 residues), see Phobius details amino acids 201 to 224 (24 residues), see Phobius details amino acids 254 to 272 (19 residues), see Phobius details amino acids 299 to 324 (26 residues), see Phobius details amino acids 345 to 367 (23 residues), see Phobius details amino acids 380 to 404 (25 residues), see Phobius details amino acids 420 to 443 (24 residues), see Phobius details amino acids 478 to 498 (21 residues), see Phobius details amino acids 533 to 551 (19 residues), see Phobius details PF00528: BPD_transp_1" amino acids 98 to 276 (179 residues), 38.3 bits, see alignment E=5.8e-14 amino acids 359 to 544 (186 residues), 27.8 bits, see alignment E=1e-10

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 86% identity to xau:Xaut_3763)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (573 amino acids)

>GFF360 hypothetical protein (Xanthobacter sp. DMC5)
MAETALTGEPRATRLRLPRHLSPLLMASGLVALFVLLPLLALAGIAARGSGDMWPHLIAT
VLPDALAETGLLVLGVGVVTLVVAVPCAWLVATCTFPGRSVLEWALLLPLAVPGYIVAFS
YLDVLHPLGPVQEALRALLGIASPRGLRLPDVRSTGGCILVLSAVLYPYVYLSARASFVL
QSAAALEVARTLGASRWRAFLRIGLPLARPAIVAGLTLVLLEVLGDIGASEFLGVRTLTV
SIYSTWVNRSNLPGAAQIALVMLALVLGLILLERWARRARRFVATGSARPQAPLRLTGLQ
GFAAAAFCALPVMLGFLVPLLHLSISAARRMAETGFPTRILGEAATTAALAAGTVTLALG
LGLVVALGQRLTRAPLASGFARVASLGYAVPGTVLAVGLLSPLAGFDNMLDAAMKQAFGI
STGLLLSGSGAALVMALAIRFLAIPVGGIEAGFAKLSPHLDMAARSLGSSQPRTVRRVLL
PLLRPALATAALLVFVDAMKELPATLLLRPLGLETLATHVYGEAARGTYEDGALAALVIL
LVGLGPVMLLARMSSSALAASADGARGSSSARD