Protein Info for GFF360 in Variovorax sp. SCN45

Annotation: Putative transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 44 to 68 (25 residues), see Phobius details amino acids 75 to 97 (23 residues), see Phobius details amino acids 105 to 125 (21 residues), see Phobius details amino acids 134 to 156 (23 residues), see Phobius details amino acids 162 to 183 (22 residues), see Phobius details amino acids 204 to 227 (24 residues), see Phobius details amino acids 240 to 260 (21 residues), see Phobius details amino acids 269 to 287 (19 residues), see Phobius details amino acids 293 to 311 (19 residues), see Phobius details amino acids 325 to 350 (26 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details PF07690: MFS_1" amino acids 13 to 329 (317 residues), 121.6 bits, see alignment E=1.9e-39 amino acids 211 to 374 (164 residues), 50 bits, see alignment E=1.1e-17

Best Hits

KEGG orthology group: None (inferred from 89% identity to vpe:Varpa_3294)

Predicted SEED Role

"putative transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (385 amino acids)

>GFF360 Putative transporter (Variovorax sp. SCN45)
VSRPAPKGALWALLAGNFVIGTGVMVVPGTLNEISASLAVSVATAGQLITAAAAVMCIGA
PLLAAAVAGWDRRQLLALTLLWYAVGHALAALMPSFGALLPVRMLTVIAPAIFTPQAAAC
AGMLVPPEQRGRAVTFVFLGWSMASVLGLPIGALIGGHLGWRMAFGAIALLSVVSAASIW
FTLPNGIRPAALTAAAWSRVLRSPVLMGIVSVTALQGTGQFVLFSYFGPILKQSFGADAT
TLSVMWALFGACGLIGNMVVSRFIDRVGAGRMVLITTVLIALSLLLWPTASTLAWLAVVL
VPWGLGCFATNSAQQARLVGLAPALAPGSVALNSSGIYTGQAVGAALGGWLLAHDAAAWM
SWVGFGVMLVAIALSTAIDRSRRPA