Protein Info for GFF3585 in Variovorax sp. SCN45

Annotation: Sulfate transport system permease protein CysT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 273 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 54 to 74 (21 residues), see Phobius details amino acids 86 to 108 (23 residues), see Phobius details amino acids 128 to 147 (20 residues), see Phobius details amino acids 197 to 218 (22 residues), see Phobius details amino acids 236 to 257 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 68 to 264 (197 residues), 43.3 bits, see alignment E=1.7e-15

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 76% identity to pol:Bpro_4353)

Predicted SEED Role

"Sulfate transport system permease protein CysT" in subsystem Cysteine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (273 amino acids)

>GFF3585 Sulfate transport system permease protein CysT (Variovorax sp. SCN45)
MRRFGAWPAWAFMALFFAVPLAALLPEAFGEGGSAFGRLFGNPLFFGALRNTLALGLAAG
AVSALVGTCIAIELARQPAARRQWMMTLLGLPLAFSGLVIAYGFILAFGRAGFVTQLLAG
LGADPAAIGSWIYSVSGLGFAYAYYLIPRVALSLYPVFANLDLRPVQAARTLGASRARAF
WDTVVPEVLPSVLSNACMVAAIAMGTYGTALALVGTQLNILPLMLLAQVGDGGSDFAVAA
ALSLVLMVVCVIVMGVGDVFTRRRERGAVGAGH