Protein Info for GFF3572 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1324 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF05170: AsmA" amino acids 5 to 122 (118 residues), 43.2 bits, see alignment E=1.3e-15

Best Hits

KEGG orthology group: None (inferred from 72% identity to xau:Xaut_1421)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1324 amino acids)

>GFF3572 hypothetical protein (Xanthobacter sp. DMC5)
VQGILISLASAIVLAISAAFAAPFVVDWNQWRGTFETEMGRTLGLPVVIRGPIEAEILPA
PRIVLRDVTLGDVVSTGGTVKELTAELSLGALMRGDIQATGVTLRKPQIRVVLDSAGRVA
MPTGTGRAAELSIARLEVEDGSLDLLDRASDHRVSIDDLDLKGEARSLTGPFRLDGEVQA
GEARFAVRSTLGKIGDDGAGKLRIVLDGRTRPYALDLDGSLNVAGAKPRFDGRATLSRHA
GDGAEAWQLSGTLKASPEAVLAESLDLALGGSATPAQLTGSARLALGRAIGLDAVLNARS
LDIDAVRAATGTKDADAGSGSPAASLARFLGGVAALPAPDIASRIGLSVEQLVLGGTMVR
DVRADISGSAAGWRVDSAEAQLPGKASLRLSGMPTRANGGGGFDGNVSFAADDPAVFLRW
AAPTAPRDYVAAAKGPVRISGRVTAGPSRIAVDMLDATFAASRVRGSASAALPDNAPPKL
DLRLSLDGFDLDPLIAAVQTASTAVGGGADGQVAIDGRNLTLSGLPLRALNLEGSATGGN
WRLARIVMDDFAGLRVEGAGRMENFSTTPRGEFNITASGAKADGLVPVARLLAGEETAQV
IGNLLPIASPVKLNSTVVWAEAGGRNVTIAGTLGQISGDVAFARTTAGVPLRIALKADAT
DGGRALAALGVDGLGQRLGPARVELSVDPLTQDEAQVRGRISLADLTAQAQGTARLSGGS
IEPNLTMRLDGADLGRLLPQASAAVEGPVPTALAFTLSRRAGAWRLGELTGSLAAAPVSG
SMEFEPGAVPRLSGKLAFDTLSVPRILAMFAARASAESGPAGLWNTARLAPASAGGIGLN
LELSAGRIAALGPYALDKGRLVLVSDGTDFDLRDLSGSLGGGRVAASLRLKRQNDLIQAD
GRLVLEQVDAGALIGPTGARTPPKGRVNLLLDLGGSGRSVQTIVQSLSGQGTLGVRDLVI
ENASPAALDAVLAEAAPLSPPPDERRTAQMLDRALAKGPLKLAFVETTLGVVNGVARLSP
ARTTADGVRVGLSGSLDLSRLILDAGMDLEGAESAGGVPGGAISWRGSVAAPERRVSAPA
ATSFIAMRAIERETRRLEERQRGGTPAPEPATAPAAPAPVAPVSVTPAPVVPAPAPAPAA
IAPVQPASPPPAPQVVPAPRPAVTAPAPAPAPAPAPVATAPAAPVVAPAPQPAPVPVPRA
VDRNQEIERRDVPASGFGVPTASGTAGTATPGEVQSRQTHQAAPARTEPERQLESHATPE
PAGESRRPPVVRQTQPQPPAPRRTDRVEPPPPPRFAVPAPSDGQLPPTSGFGDLPRPPGL
VGAR