Protein Info for GFF3571 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 510 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 36 to 50 (15 residues), see Phobius details amino acids 57 to 75 (19 residues), see Phobius details amino acids 83 to 102 (20 residues), see Phobius details amino acids 106 to 106 (1 residues), see Phobius details amino acids 111 to 125 (15 residues), see Phobius details amino acids 140 to 168 (29 residues), see Phobius details amino acids 181 to 200 (20 residues), see Phobius details amino acids 229 to 251 (23 residues), see Phobius details amino acids 275 to 295 (21 residues), see Phobius details amino acids 301 to 321 (21 residues), see Phobius details amino acids 333 to 352 (20 residues), see Phobius details PF13231: PMT_2" amino acids 36 to 199 (164 residues), 61.1 bits, see alignment E=7.9e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (510 amino acids)

>GFF3571 hypothetical protein (Variovorax sp. SCN45)
MLLLWTLSISFFYPTPPWDNVEELFWGSSFEWSYYKHPPLPSWLMGALMLLGGRQPWLTY
AAGVGCGVGALYLVWRWSLEMVSPARAALAVLLGSLVAYHVQRAVIYNHNTVQLLPLAGY
WWMLWRVLHAPASSKLRDWALLGVFAALSMLTKYSAVVQFAVGAAFIVRQGLWRDAHVRR
GLLLAAGVALVLMAPHLWWVLEHSTRTIAYARHSVHPAGTHGHGYRHLLHVFLVQVSRLL
PMLLLAGWAWFTRASVAPAPSSATTQGLNAFDRRFLAWATLGPMCLVFPAAVLLKIPLIP
SWLTTFFLPAALWAVAVLPGLEAERWSRRRWRGVIVTVAVLHVAGALGQGWVDGVLSKRL
GYITRANLPAQEVADAVRVIWRERVGDQPFKLLVGDTWFAGAVALKMDSSTQLLIDGDER
NSPWLPAGTLEREGGMVLILDTHEFRSEGALLEPRLALADCRGTLDIPWAGTDERNSLRM
RWGIVLPKGERGAKNCAADAAGRGQGVVSP