Protein Info for GFF3571 in Sphingobium sp. HT1-2
Annotation: hypothetical protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Phage tail fiber protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (2568 amino acids)
>GFF3571 hypothetical protein (Sphingobium sp. HT1-2) MATVYNMLLEVTPLNGATPKTLRLTNVSADKLATTANDQAWLPCITSMPSLSFTLSSDGL LDDPKVERGEISFFCSDDFTNHEWSSYVWNGATYRAWYGEHGTDFSNYQKWGEGKASNLE REGNIVTVRLLGPEADLTTKILSKTYAGSGGAEGPIGSKGNLKPRCFGNPKSVEPVEIDP VNLVYQVHGYGAVYAIQPYEYGLPLDATQYKGNATSYANLIAATLKPGEYATCFAEGLFR FGGTPTPKITADVSMSGGTTLPAVATALLQAAGVSADKIGDFSAFNAVETDLYVTSQTEF FDALQKLFRDAGGYVFADKNGVYQCGKFYQSAKSAVTLNADRSTFPLFLDWKEEPPKAPI CKVSYGYQKCWGVHSDSDASPIVNELAEAADEAALAAQTAQTTADNAQSLANDAKGVADT ALDAVKDDDGTVIKSKTIQEKVNEANADIAELIDTYGSTATAAASANAAKISEDAAKAAA TTSQTASNNAAQAKADAEAAEADAIAAKTAAETARSQAQTAATNATTAKTAAETAKTAAE TAKTAAQTAKTDAETAFSNSTTAKNAAVAAQGAAETARNNAQTYATNASNSATAASGSAS TASTKATEAGNSATAAQASNVSATSTYNDLLNTVYNQPLLPFSFEEGTKHWTRVRNGAPA TLATTAGTQVTDADLGQSLQFSDWTSAGTNILSKGAVAVSAGRIYEVTVRFKVTASDGSV SFNPILATMAENYVGTDGSIAAFASGGSSSVNGANTVQTFTAKFAIGGGTGIASLPSNTK YIRPGLRLNSSETGLTLVIGEIRLLDVTEREASAASANAASTSASAAATSATDAGTSASA AQTSATTATTQAGKASTSATNAATSETNAKGSENAAKTSQTAAATSATNAGNSATAAATS ASTASSKATEASQSASTATTQANTATTKAGEASTSATNAATSETNALGSKNAAATSATNA ATSATNAGNSATAASGSASTAGTKATEAGNAATSAAASAVSANSTYNSTLGALYVTSPIL PSTFDEGAKHWTNQRTGNPTSLADIPGTAVIDADMGPSLEFNNWAGAGNNILTKGVIAPK PGRIYEVSVSFKITQSDGAVSFNIALGTMLSGFGTAASNYRSSTIGNYSTTGSVNVLTAK FSLDTISGVTTIPADVVLFRAGIRLNSSETAGSLIFRVGEIRITDVTEREAALASANGAA ASASAAATSASTASTNATNAGTSATSASNSANTATTKAGEASTSASKAATSETNANASKN AASTSATNAANSATAAGGSASAASGSASNAQTSATNAGNSASSAAASSVSATSAAKDASN RATGNIVSRGEWNADSGKGNWTGAVGVYLANEIGQYILSQNDRDSYDGEPIAGNWSNRRF RITGEVQTWGSYAAQAGIHCVTNDGTNGWYLQTVLAAGQFYTPFSFETTLPANVKSARGI LVSDGPHGATGHGVNWRFIRIEDITESARAAGSASAAASSASAAGTSATNAGNSANSATQ SANTASTKANEASNSATSAANSASSASSSSTNASNSATAANSSDVSAKLSAASQMPSDFQ QDGKFWQQGFGGLPAALNPITANSTFAFVNNSDVGRSMRVTATAQTDVGNIGMMPLQADR VYRITAKVRQQTGSVFAQLQLYRIGVNATGSTMGNGTVQSTYTFTALNQWVELTGVVPAS TTNAMIAAGASSIRCLLRLLAASSTVTVDYSFIRIEDITESTGAAGSASAAANSASQASA SQSAAGSSASSAQTSATNAATSAGQASTSASNASTSANNAAGSANTASTQATNASNSANA ASGSATSASNSASAASTSASNAGNSATTSAAQALYAGSRATGNLVAKPTFEDGSIGMWNG SVSVVADTSSATGTTKALRSQARDATEGAEFIPLPQTNNRVFRISGYARCGSSSAYAVNV GIQGQLANGTFSFPYSRAANAGTTAWTYFEFNLGIPANILRFKPFVQSNNDAGQAGSVHD ARVVGLRIEDITESNSAAGSASAAATSASNAQTSATNAGNSASSASGSANTAATQANNAS NSASAAAGSASSASTSSSNAGSSASSASNSANTASTKANEASSSASAASGSAATATAKAS AAATSATLAATFSTGGGNIIPNTAFAVGVDGWNNWAPTGSTALTWVRDGGGDDWRPTNEH TIGIQQYDTDPNRWSQWHTDEISVSANTWYEFSGYVAAHRCNAYVRIDWKDANGTGIKSD YNLNTNTADFTGGRNINNWKRCWNKVQSPSNAARAHLVFVKDPTFQNAGYTDSWGWLCRP MIRQTYAEANGPSPFSHGSDASTTIAQQATINSTQTALATANSSIASLNNTVSTLNSSVS VQQTAINNLNGKTAAYWQVNAVSGGRAQLTVFADSNGGGGVDIVGDLRISGNAMIGGTIN PEALALQRFVKRLGPVTAAGNPGATMYSGTLGQTTGYGSYLLEGNLSFTYLTGRQTNTQS GKPYYIDYLQDGGLTIYIKKNGVLLASASWTGAAQSTYASRSYTAALTTNFDGPDPDTFT GDVTIEVVPFKGNTDTGMVNQGDYYTRQISGNYLNFSINNLRLKWTFI