Protein Info for PS417_18280 in Pseudomonas simiae WCS417

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 463 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 8 to 461 (454 residues), 403.2 bits, see alignment E=7.7e-125 PF02321: OEP" amino acids 60 to 250 (191 residues), 95.6 bits, see alignment E=1.7e-31 amino acids 277 to 459 (183 residues), 104.4 bits, see alignment E=3.3e-34

Best Hits

Swiss-Prot: 55% identical to OPRM_PSEAE: Outer membrane protein OprM (oprM) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 97% identity to pfs:PFLU4118)

Predicted SEED Role

"RND efflux system, outer membrane lipoprotein CmeC" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U3T9 at UniProt or InterPro

Protein Sequence (463 amino acids)

>PS417_18280 transporter (Pseudomonas simiae WCS417)
MKSHWPLLAAMALGGCVNLAPQYERPEAPVSEQWLPAANLPKGKVGADIKWQQFFTDRRL
AQLQQLALANNRDLRLASLNVEKAQAQYRIKRADLFPTVDAGVSGTHSRTPGSLSNTGTA
VTTHDYSAQLGLSSYELDVFGRVRNLRDEALEDYLALTETRRSTQISLVAEVATAWLTLA
ADNERLLLAQETLTSQLATYDLTQRSYALGGSSALSVAQAQTTVESARGDVASYESQILQ
DRNALRLLVGSDLPEALLPGTRLESAAVLVDIPAGLPSSLLQQRPDVLSAEHTLKSANID
IGAARAAFYPSISLTANAGSSSSALAGLFKSGSGAWTFAPSISVPIFDGGSNRATLDSAK
VEREIQLQTYQQTLQTAFREVADALAVRSTLDRRIAAQQALTDASRKSFELSDALYRGGS
QSYLEALDAQRSLYSAQQDLITLRLTEQSNRITLYKVLGGGWN