Protein Info for GFF357 in Variovorax sp. SCN45

Annotation: SOS-response repressor and protease LexA (EC 3.4.21.88)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 227 PF01726: LexA_DNA_bind" amino acids 6 to 68 (63 residues), 90.2 bits, see alignment E=5.8e-30 TIGR00498: repressor LexA" amino acids 6 to 224 (219 residues), 228.1 bits, see alignment E=4e-72 PF00717: Peptidase_S24" amino acids 103 to 218 (116 residues), 119.2 bits, see alignment E=7.8e-39

Best Hits

Swiss-Prot: 99% identical to LEXA_VARPS: LexA repressor (lexA) from Variovorax paradoxus (strain S110)

KEGG orthology group: K01356, repressor LexA [EC: 3.4.21.88] (inferred from 99% identity to vap:Vapar_2636)

Predicted SEED Role

"SOS-response repressor and protease LexA (EC 3.4.21.88)" in subsystem DNA repair, bacterial (EC 3.4.21.88)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.4.21.88

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (227 amino acids)

>GFF357 SOS-response repressor and protease LexA (EC 3.4.21.88) (Variovorax sp. SCN45)
MQFAVKLTARQQQILDLIQSAIARTGAPPTRAEIANELGFKSANAAEEHLQALARKGVIE
LVSGTSRGIRLKGDALRSLNETRHREGGQFSLSLPGMAQLALPLIGRVAAGSPILAQEHV
DQTYYVENTLFQRQPDYLLKVRGMSMRDAGIMDGDLLAVQATKEARNGQIVVARLGDEVT
VKRLKRNKQVIELHAENPDYPTIIVQPGEPFEIEGLAVGLIRNTMLM