Protein Info for GFF3568 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1274 transmembrane" amino acids 97 to 120 (24 residues), see Phobius details amino acids 303 to 326 (24 residues), see Phobius details amino acids 365 to 388 (24 residues), see Phobius details amino acids 858 to 881 (24 residues), see Phobius details amino acids 891 to 913 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1274 amino acids)

>GFF3568 hypothetical protein (Sphingobium sp. HT1-2)
VADAQAVIRINIEAAGAEAGARRVNQAIGSVGNSSRRTAAANDNQTSALGRLTRAMNDNA
KAGGAVGKIMDDINGRSAAAIPVVGNLISKLMGMGPVAGIIGGVVLGIGALATVAVGAAA
KVETWKANLLTMTKSTEAADAAYRELVAFGNNTPFSTEQSVNGFIKMRALGLETSTEIMT
SFGNTSAAMGKDMTQMVEAVADATTGEFERLKEFGIKASQEGNKVKFTFQGVTTTVDKNA
SAIQKYIVGIGNTNFGGAMARQMATAQGAFSQFEDQIFNTLAAMGDGVLNKTVGKVVNAV
SGGLAAITPLLSGIMDIVGGLLSFVVDVGSGLLSMSAGGTQGAGILKTALDGVAVAFKFL
GEWVSMAGSVIGSVFGFAGDVIGAVAGAMRSMFGEVFSWLVPATKSTGQSMGESLVGILR
AAQFVAGQLPNIFKVALLELKTAFAQTGEALAAALTGDFSKFSKIDLSFNRTQKVASRVM
TGAGRVQQDQRGNRKWIDEATGKSAKGNIDFAALGKDKPAADKKKGGESDAEKRAKAEKE
FWETLKNEAATAELLGIKAEDHKKQLELQKILGRDLVAAELQRLTTATQLVRTNKFLADA
AQAHIDAVTAAGISEEMTKKRIAGLTQDQIESERGILEFRAKAAAEGVDLQSAAYQAAEK
ALRTDLARVDANKLLNQQLDRSAELADKYSASYRKAQAAKQSATDMAALEVGRANGTISD
AVYKEIKEGLAQAALDTSMQFRDEFGQRIEALGDQFQGAFGSAISKLGRAIQGIAAAATG
KNFGGLGAIGSLVDVFGRKVDGSLNGLGKSFQSGASSFGDKLFTSSTWTKPLSSISDSFG
GFKKSFGSMFSKGGDFMSGLGSVLGNAAGGAGIGSAVGSMLGLNSTGSSIGGAIGSIGGP
LGSLAGSIIGGLGANLLKKAKWGTATVTNGTVTTRGNKQAYEDNASTAGNSIVSTLDNIA
AQLGADVGNYSVSLGQYKGKWRVSSSGRSGKLKGKYSDVSDYGKDGAEAALRAAIADAIS
DGAIVGVRASTNALLKAGDDIEAQMEKALTFENVFKDLKSRLDPVGSALDALSLEFKNLT
KIFNEAGATSEEYAQLEQLRTLKLQDIIKEQTSGLRDILDTLNGEASGKSAMAQLTENMA
AFASYQSDALAGKQVDQDAYSTLVDKILNNSQSVYGTNSKEYQALLSDLKSTTTGFLTNV
ETALGVASTTATTSDVTSVLNSQTNAITTNQTLQTDYLAQILSAIKSGNSAGTVVYTTTG
GTTYTAINGKLQYV