Protein Info for GFF3563 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 474 transmembrane" amino acids 18 to 42 (25 residues), see Phobius details amino acids 54 to 76 (23 residues), see Phobius details amino acids 87 to 106 (20 residues), see Phobius details amino acids 112 to 134 (23 residues), see Phobius details amino acids 154 to 176 (23 residues), see Phobius details amino acids 202 to 222 (21 residues), see Phobius details amino acids 258 to 285 (28 residues), see Phobius details amino acids 292 to 312 (21 residues), see Phobius details amino acids 320 to 341 (22 residues), see Phobius details amino acids 365 to 388 (24 residues), see Phobius details amino acids 400 to 425 (26 residues), see Phobius details amino acids 431 to 452 (22 residues), see Phobius details PF07690: MFS_1" amino acids 28 to 416 (389 residues), 74.2 bits, see alignment E=9.4e-25 PF11700: ATG22" amino acids 60 to 448 (389 residues), 95.1 bits, see alignment E=4.3e-31

Best Hits

KEGG orthology group: K06902, MFS transporter, UMF1 family (inferred from 79% identity to xau:Xaut_1429)

Predicted SEED Role

"Major facilitator superfamily MFS_1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (474 amino acids)

>GFF3563 hypothetical protein (Xanthobacter sp. DMC5)
LPSSQPYARVPRRAVIGWILFDPACQPFFALITTFIFAPYFASAVASTPAEGQSLWGFAT
GAAGLVIAVFSPVLGAVADASGRRKPWIAAFGLMLMTGSALLWFAVPGDTARIPLVLAAF
AIGTIGVEFATVFNNAIMPDLVPPERLGRLSGTGWAVGYFGGLVALALMLCFFSTAPDTG
LTLIGRPPAFGLDAATREGDRFSGPLTALWFAVLVLPMFLFVPDRRKSVPLGEAVRKGLS
EIRGLVPKLRTRPALARFLIANMIYADGLVALFAFGGIFAAGLFGWGSIEMGIFGILITV
TATIGALAGGWLDDAFGPRIVILVALLALLLACVGLLSVAHDSILFGLVPTPPGTGLYGS
LPEKVYVGFGLLIGIVAGPLQSASRTLLVRLAPPENIGECFGLFALSGKITSFAAPTSVA
MVTALTGSQRAGVAVLVAFFSVGAILVAGLRAPLRADGGQAKDGPRTANQARRE