Protein Info for GFF3555 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 25 to 45 (21 residues), see Phobius details PF04471: Mrr_cat" amino acids 148 to 252 (105 residues), 95.8 bits, see alignment E=2.9e-31 PF22722: NA-iREase1" amino acids 154 to 252 (99 residues), 36 bits, see alignment E=8.8e-13 PF13156: Mrr_cat_2" amino acids 165 to 258 (94 residues), 25.6 bits, see alignment E=1.5e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (260 amino acids)

>GFF3555 hypothetical protein (Sphingobium sp. HT1-2)
MHFVVAFLILVVVLASVTGMGFGNALILGVVLIVIAAIVVAMMAADNGKKMRSALEQEGG
RLVDEHLSALVRRYRQLVRTDDYGLIDNKAWEKERLHFFNNIVMPALPPQAGWEQFRSHF
NDAVLDPKVRAAFEQQRQSFADHFNSDIDPIDYEHFCAERLRKLGWDAKVTKSAGDQGAD
IVARRADRAMVVQCKRHAKTVGNKAVQEIVGAMRFYDADYALVIATNGYTKAAHALADVN
GVILIHHDDLVDGWVPWAAS