Protein Info for GFF3540 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 transmembrane" amino acids 51 to 82 (32 residues), see Phobius details amino acids 97 to 122 (26 residues), see Phobius details amino acids 185 to 185 (1 residues), see Phobius details amino acids 191 to 211 (21 residues), see Phobius details amino acids 247 to 304 (58 residues), see Phobius details amino acids 311 to 332 (22 residues), see Phobius details amino acids 346 to 377 (32 residues), see Phobius details PF01594: AI-2E_transport" amino acids 54 to 377 (324 residues), 198 bits, see alignment E=1.2e-62

Best Hits

KEGG orthology group: None (inferred from 86% identity to xau:Xaut_3129)

Predicted SEED Role

"Putative permease often clustered with de novo purine synthesis" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (403 amino acids)

>GFF3540 hypothetical protein (Xanthobacter sp. DMC5)
MDGDRTRMPELRSDPTSPARRGAAFARLPRMPVPIHSGVEGTSVRIQARFWVGALLLTAI
VLWLLSGILLPFVAGIVLAYFLNPVVARLERIGVARTLSALVVVGIMLLLVMLFFLLALP
ILSSQLFEFIQRLPSYVTRLQGLLTEENREWLSGIVGDRLPDMQRSISDLMTQGVSHVLS
LLSSVWSGGQALLSLFALLVVTPVVVFYILCDWNEMVGLVDRLVPVPHRPVVRGLARAMD
NAVAGFVRGQATVCLLLGGFYAVSLSMVGLNFGLLIGIVSGVITFIPYVGSLTGFVLAMG
VAIVQFFPDWSMIGTVLAIFVAGQTIEGYVLAPKLVGDSIGVHPVWLMFALFAFGYLFGF
VGLLLAVPLTAVAGVLVRFAIARYMQSSLYQGAAEDDPPAETH