Protein Info for GFF3498 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1299 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF13547: GTA_TIM" amino acids 435 to 733 (299 residues), 440.2 bits, see alignment E=6.3e-136 PF13550: Phage-tail_3" amino acids 792 to 954 (163 residues), 156.7 bits, see alignment E=7.6e-50 PF23666: Rcc01698_C" amino acids 1044 to 1143 (100 residues), 90.2 bits, see alignment 1.4e-29

Best Hits

KEGG orthology group: None (inferred from 75% identity to xau:Xaut_3171)

Predicted SEED Role

"Gene Transfer Agent host specificity protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1299 amino acids)

>GFF3498 hypothetical protein (Xanthobacter sp. DMC5)
MATLLLGAAGGLIGGALFGPIGAVAGRALGALGGSVIDGALLGGNRSRHAEGPRLTDLDV
MASTAGAPLPRIYGRARLAGQVIWALKLKEVKKEETQSVGGKGGSLSASTTTYTYYANFA
VALCEGPVSRIGRIWADGKLLDTRRLHITTHLGGADEAPDSWIEAKQGEVGTPAYRGVAY
LVFRNLDLTDYGNRLPQITVEVERAIGALEKQVRAVTLIPGATEFGYDTRNIRQVYGEAS
YGPENRHVTSFFSDFEASLDQLLGACPNLERVSLVVSWFGDDLRAGQCAVRPKCERLNKA
TAPALWSVAGQTRLTTPAVSQYEGRAAYGGTPSDDSAVRAIQRMAEAGLKVTLNPFVMMD
IPAGNTRPDPWTGAATQPPHPWRGRIVCDPAPGRTGSVDGTAACRAQVAALFGTAGAGDF
TRIGTSVIYHGPEEWSLRRMVLHYAHLAVAAGGVEAILIGSEMAALTRLTDDTGAFPAAA
ALAQLAADVKAVVGPSTLVSYAADWTEYGAQVLASGDMRFPLDAVWGADAVDFIGIDYYP
PLADWRDGSAHLDAGLAQSNHDRAYLKANLRRGEAFDWFYADDAARAAQARSPITDGAFG
EPWVYRQKDLWSWWANAHHERIAGVRSVAPTAFVPGAKPVRLMEAGCPAVDKGANRPSAF
PDAKSAENRLPPFSSGARDDLIQRRTLEAILATFGADADTADNPAATLYPGRMVEPDALF
LWSWDARPYPQFPYATDVWADGANWATGHWLTGRLGAAPLDALVATLAADFGIADVDSAR
LSGAVEGYVVEQPMTARAALEPLARAFAFEAGEEDGRMVFCPRGQGEVAEIATDNLVQVE
GTPLLAVTRAQETELPLEVTVGFVDALRDYRRATVSSRRLAGRSRHVTQADLAVVASDAV
MVRAADVWLQDLWAGRETLSFSLPPSCLALAPGDLVRLTFDGRTRLVEIVRVEEAEALAI
TARTIEPEVFDVALAEEGAGAIVLPGASGPPAVRVLDLPALSEAEPVPLQWLAAAASPWP
GTLAIWRSTDGASFETLAPVTASATFGTLTAPLAPGPLWRFDRHNGMEVTLQTSLLVSAG
EAEVLAGANLLVLLAEDRAPEIVAFTEAELVDAGSYRLTGLLRGLAGTEAAGAETWSAGT
RLVRLDGTLVSVASGVAALGRSFIYRVGSARDDQGAEEVTEVSATVSGRALAPLSPVHVR
ARRTAAGVALSFIRRTRIAGDGWDAVEVPLGEASEAYRLDILDGETVRRSLSLTSPEALY
AAADEIADFGAPQVELTVRIAQLSASVGAGTAVTASVRP