Protein Info for GFF3493 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 PF13439: Glyco_transf_4" amino acids 20 to 169 (150 residues), 75.2 bits, see alignment E=1.7e-24 PF13579: Glyco_trans_4_4" amino acids 20 to 155 (136 residues), 65.6 bits, see alignment E=1.7e-21 PF20706: GT4-conflict" amino acids 131 to 317 (187 residues), 35.2 bits, see alignment E=1.8e-12 PF00534: Glycos_transf_1" amino acids 185 to 348 (164 residues), 109.5 bits, see alignment E=3.5e-35 PF13692: Glyco_trans_1_4" amino acids 188 to 335 (148 residues), 85.3 bits, see alignment E=1.3e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (385 amino acids)

>GFF3493 hypothetical protein (Sphingobium sp. HT1-2)
MADADRRLWLVARVHAPDEGGVQTYVTETARAYAALGWRVTLFAKSSAGPRRVSSDGVEL
IDVGPASRLRVYGRLFRAMAGAWLRGERPQAIHACTWRAALPALAFPRPLIVTIHGREVG
RPAGGAFALLRLVLRRAPRIVAVSAVTRDLLVQRLPDLAARTIVAWNGVRMPADRPTTEF
QNGAAPAQILTVCRLVARKNIPAAIDAAAACLREEASLHYTIVGRGVDGIRIQQTVRRHQ
LEDHVRLAGYVSDAELAAQYRDADIFLHPQIALEDGAEVEGFGLSVADAMAQGLACIVGA
DGGPAELVRDGVTGLVVDGNSPSALRAALALLARDPALCRRLGDQARIWAANNLSWERHC
HLVLHELSARRPAPSRSTPALTEGG