Protein Info for GFF3483 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 560 transmembrane" amino acids 26 to 48 (23 residues), see Phobius details amino acids 54 to 74 (21 residues), see Phobius details amino acids 107 to 133 (27 residues), see Phobius details amino acids 155 to 176 (22 residues), see Phobius details amino acids 188 to 209 (22 residues), see Phobius details amino acids 238 to 258 (21 residues), see Phobius details amino acids 278 to 301 (24 residues), see Phobius details amino acids 322 to 342 (21 residues), see Phobius details amino acids 351 to 373 (23 residues), see Phobius details amino acids 413 to 438 (26 residues), see Phobius details amino acids 459 to 478 (20 residues), see Phobius details amino acids 484 to 506 (23 residues), see Phobius details amino acids 538 to 558 (21 residues), see Phobius details PF13520: AA_permease_2" amino acids 22 to 479 (458 residues), 228.8 bits, see alignment E=1.2e-71 PF00324: AA_permease" amino acids 30 to 440 (411 residues), 51.4 bits, see alignment E=7.4e-18

Best Hits

KEGG orthology group: None (inferred from 93% identity to xau:Xaut_3183)

Predicted SEED Role

"Amino acid permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (560 amino acids)

>GFF3483 hypothetical protein (Xanthobacter sp. DMC5)
MSIAATNEAVAAPEAGSLQRKISWTGAFWIASGVPALVLFSIGAIGATVGAPAWFVWILS
IVFGFIQAFSYAEIAGLFPHKSGGASVYGAIAWVRYGKLLAPFSVWCNWLAWSPVLSIGS
GLAAGYVLSILFAPDAAINTWQLTLVDLGWLKAGLTLRINATFVLGAVLLLVAFAIQHRG
ISQTAKVQVILGVVALLPLILIGLVPLFTGDVLAANLGPFAPLAKDEAGKVIAGEWNMAG
LTLMAGGLFIAAWSTYGFETAVCYTREFRDPKTDTFKAILYSGLLCIFVFTIVPISFQGV
LGLGQLVTPAVVDASGAVTTPAVYSGILSADIYSGMGVASAMADMIKGGPIVHTVIVVML
ILALMLAIITSMAGSSRTLYQASVDGWLPKYLSHVNENGAPTRAMWTDLGFNLILLMMSD
YVFILAISNVCYILFNFLNLNSAWMHRIDRPAWDRPFKAPMWLIGMGTVLAYVNLFLLGM
GADIWGAGTLVTGLIVSAAIIPVFLFRHYVTDKGQFPAAMMEDMHLKAEPGAGTRAGMLP
YLALVLGAVVIIVARSIAVY