Protein Info for GFF3476 in Sphingobium sp. HT1-2

Annotation: Putative uncharacterized protein ydbH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1079 transmembrane" amino acids 14 to 34 (21 residues), see Phobius details PF11739: YdbH-like" amino acids 27 to 915 (889 residues), 259.1 bits, see alignment E=7.9e-81 amino acids 935 to 1043 (109 residues), 65.7 bits, see alignment E=2.1e-22

Best Hits

KEGG orthology group: None (inferred from 70% identity to sjp:SJA_C1-22680)

Predicted SEED Role

"Putative uncharacterized protein ydbH"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1079 amino acids)

>GFF3476 Putative uncharacterized protein ydbH (Sphingobium sp. HT1-2)
MEDENGEAEIRRGWLRWLGVGTGSLGLVLVALWTQRAPIAENFVNRELNRRGVQANYDLT
QVGLRTQRIENVVLGDPARPDLTARWVEVDIAFSGVTPQVAAVRAGGVRMRGAYRDGVLT
LGELDKFRDPDSTAPFAMPDLLLHLRDAQLRLDTDAGAVGMQIDGNGNLKSGFRGKLAAA
IPRARMAGCGVARASAWLDVAMVDGRPHLRGPIKGDALACADMAMAAPTAEIDLWLGQGL
DRWNGSAKLAGEALKAQGMLLAAPVGRIEFDGSAQAMAGRARIGARAFSGAGVLAGPTEL
AGDWTLRGGDATFSGDLTARNGRMAGRDPLAALRTSTAGTPVAPLALRLADAARRAGADN
LLRARVALAQKGDAGSLVLTDTEFAARSGAQVAVARDGRVTLAWPGKGGAAIDWALDGAI
TSQGGGLPKAALRLARRTGGGFGGQLFIDPYTADGARLAFEPVRFVAGPKGDTRFTTALR
LDGPLPDGAVRGLGLPIDGRLASNGAIAINEHCAPLTLLEARYGSFALGQTRQTLCPLPN
SALFAMGPGGMKGGAELRNVALNGRSGDSPMRLKADNARLILGQTGFTLGNADFAIGPED
APVRLSAMSVTGAATKDGFAGDIKGAGGRIGTVPLIVEQGAGGWAFAKGALSLKAAMQVR
DAQPSVRFNPLTVPDFALVMKDGRITATGALQVPGKGATVARADIAHDLGSGKGRADLTV
PDLGFGPGLQPEELTPLTLGVIANVAGRVTGEGHIRWTGSDVSSDGVFRTDRLDLAAAFG
PVEGLSGEIRFSDLLNMVTPTGQEARIALVNPGVEARDGTIRYRLGAGQKVHIEGGGFPF
SGGELVLLPTTMDFGADVDRYLTFRVIGLDAGAFIQAMDLKNVSATGTFDGIMPLIFNAQ
GGRVAGGVLVARQQGMAPLIMPEGVLPSIPCDPTRQSGVLSYVGPVSNEQVGVMGKVAFD
ALKDLQYKCLTILMDGALDGEMVTNVVFNGVNRGQLGGAPRGLAGNFVGLPFIFNVRIAA
PFRGLMRNAQYYTDPTQAVRDRVAEETQEKMRAQSARDLQSGLAVQPVASETVRNTEPK