Protein Info for PS417_17795 in Pseudomonas simiae WCS417

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 transmembrane" amino acids 25 to 41 (17 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details amino acids 100 to 123 (24 residues), see Phobius details amino acids 136 to 162 (27 residues), see Phobius details amino acids 171 to 199 (29 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U5U2 at UniProt or InterPro

Protein Sequence (247 amino acids)

>PS417_17795 ABC transporter permease (Pseudomonas simiae WCS417)
MVFYCVSRPVSLAALFIKEQLREPVALFWTVISPVVTYYLITYVRAPLNSSAVDYLSSTS
WFYAFVSSNVALFGLAFYMVGRRESGFLRSFVYTGRTKVVFLVGQFFAYTVVSILYGSVF
YLLTRIFSGRVDVAEYLVIIGRFYVCFLVFSIPSLLLTLVPLGFQNTSTLFSIVSLTMLA
LGILSVGPVSPALGVISFFNPMWWANRIMLDGVMECGMVVLVVIISLPFLFLVMCRFLLI
NPVWSRY