Protein Info for GFF3475 in Variovorax sp. SCN45

Annotation: Gate supefamily SpmA/SpmB domains protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 signal peptide" amino acids 1 to 5 (5 residues), see Phobius details transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 29 to 52 (24 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 95 to 118 (24 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details amino acids 172 to 193 (22 residues), see Phobius details amino acids 204 to 230 (27 residues), see Phobius details amino acids 236 to 255 (20 residues), see Phobius details amino acids 278 to 298 (21 residues), see Phobius details amino acids 353 to 376 (24 residues), see Phobius details amino acids 387 to 408 (22 residues), see Phobius details PF07670: Gate" amino acids 51 to 159 (109 residues), 43.5 bits, see alignment E=1.9e-15 amino acids 276 to 379 (104 residues), 45.5 bits, see alignment E=4.4e-16

Best Hits

KEGG orthology group: None (inferred from 94% identity to vpe:Varpa_0154)

Predicted SEED Role

"Fused spore maturation proteins A and B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (409 amino acids)

>GFF3475 Gate supefamily SpmA/SpmB domains protein (Variovorax sp. SCN45)
VLNGLWLGFFGVAALAALGRWLVGGDPTVFAALVASLFTMARLAVEVMVLLFGTLTLWLG
FLRIAEAAGLVGWLARLLGPLFRRLMPGVPAGHPALGLITMNFAANALGLDNAATPIGLK
AMRELQRLNPDPVTATNAQILFLVLNASSLTLLPVTIFMYRAQQGAGDPTLVFLPILLAT
SVSTLVGLLSVAVAQRLRLWDPVVLAYLVPGALLLGGFMALLGTLSAAAIASLSSLLGNL
TLFGVILVFLLAGAIKRIKVYECFIEGAKEGFDIAKNLLPYLVAMLCAIGVLRASGALDF
ALNGLRWLVTAGGFDARFVDAMPTALVKPFSGSAARAMLIETMKTQGVDSFPALVAATIQ
GSTETTFYVLAVYFGAVGIQRTRHAVSCALLAELAGVIAAVAVCYWFFG