Protein Info for PS417_17770 in Pseudomonas simiae WCS417

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 820 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details transmembrane" amino acids 242 to 263 (22 residues), see Phobius details amino acids 283 to 310 (28 residues), see Phobius details amino acids 338 to 360 (23 residues), see Phobius details amino acids 388 to 405 (18 residues), see Phobius details amino acids 411 to 437 (27 residues), see Phobius details amino acids 459 to 479 (21 residues), see Phobius details amino acids 684 to 707 (24 residues), see Phobius details amino acids 738 to 758 (21 residues), see Phobius details amino acids 780 to 802 (23 residues), see Phobius details PF02687: FtsX" amino acids 243 to 366 (124 residues), 44.6 bits, see alignment E=1.4e-15 amino acids 693 to 807 (115 residues), 56.9 bits, see alignment E=2.3e-19 PF12704: MacB_PCD" amino acids 462 to 645 (184 residues), 37.2 bits, see alignment E=3.9e-13

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 94% identity to pfs:PFLU4001)

Predicted SEED Role

"AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1TQC7 at UniProt or InterPro

Protein Sequence (820 amino acids)

>PS417_17770 ABC transporter permease (Pseudomonas simiae WCS417)
MAVFHWTLRALLSHWRRHPVQFFSVLTGLWLATALLVGVQALNSQARDSYARASQLIGGE
PQASLGTPDGASFAQDVFAQLRRAGWPVSPVVQGRVQLEGQPDVRLQLMGIDPVSLPGSG
AVAGQRLSQAQMLAFFDPPGRTWIAPQTLQALGLHEGQQPTTLSGHTLPPLQIQADMAPG
LLLTDIGFAQPVLEMPGRLSRLLVDKAFAAGQPTAPAGLQLKQGEDNNLARLTESFHLNL
DALGFLSFVVGLFIVHAAIGLALEQRRGLLRTLRACGVSVRMLIASLSVELGALSLLGGV
LGVASGYLLASLLLPDVAASLRGLYGAEVPGQLNLSPWWWGAGLGLSLLGALLAGASSLW
RAARLPLLALANAQAWHEAHGRWLRRQGWVASAALLIAVLALWLGNSLAAGFVLMAALLL
GAALGLPVVLNGLLKAVLGRSRSVLGQWFLADCRQQLPALSLALMALLLALAANIGAGSM
TSGFRYTFNNWLEQRLTAELYLNPQTPAQAQQLSTWLGQQPLVQTVLPTWQVAVQLQGWP
ADLFGVVDDPTYRQHWPLLEAANKPWDQLQQGDTLMLSEQLARRLNVRLGDSVNIATPQG
VWAPKVVGVYADYGNPKGHMLVNSTHLLTHWPTLSPARFNLRVAPENVAPLVREVQRAFA
LDDSRIIDQQQLKGWSSQVFERTFAATAALNSLTLGVAGVALFISLLTQSQSRLGQLAPL
WALGVTRRQLMLLNLGQTWLLAVLTLILALPLGLLLAWCLDAVINVQAFGWRLPLQVFPW
QLAQLLGLAMLATLLASAWPLWQLYRSRPADLLRTFAHED