Protein Info for GFF3468 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 174 PF13302: Acetyltransf_3" amino acids 3 to 140 (138 residues), 51.9 bits, see alignment E=3.4e-17 PF00583: Acetyltransf_1" amino acids 34 to 139 (106 residues), 68.8 bits, see alignment E=1.2e-22 PF13673: Acetyltransf_10" amino acids 55 to 142 (88 residues), 30.6 bits, see alignment E=7.7e-11 PF13508: Acetyltransf_7" amino acids 57 to 140 (84 residues), 42.7 bits, see alignment E=1.5e-14 PF08445: FR47" amino acids 79 to 140 (62 residues), 22.8 bits, see alignment E=1.9e-08

Best Hits

Swiss-Prot: 50% identical to ATSE2_PSEAE: Acetyltransferase PA2578 (PA2578) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 54% identity to sme:SMc04442)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (174 amino acids)

>GFF3468 hypothetical protein (Sphingobium sp. HT1-2)
MVHLLPFTPDHFSTLSGWFGSDADVVQWGGPYVHFPLSDEQMTAMLDEGRSDPPMRLCWM
AQEDGQLVGHVQIAFDWRNGNATLGRVAIAPDARGRGLAVPMLRLALASAFAFDAVERLE
LNVYAWNRPAIRSYERLGFVTEGVRLSSVRVGDARWDTAIMRMLRSEWTDSTPA