Protein Info for GFF3464 in Variovorax sp. SCN45

Annotation: Urea ABC transporter, substrate-binding protein UrtA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 37 to 377 (341 residues), 313.7 bits, see alignment E=3.4e-97 TIGR03407: urea ABC transporter, urea binding protein" amino acids 38 to 394 (357 residues), 527.4 bits, see alignment E=8.1e-163 PF13433: Peripla_BP_5" amino acids 38 to 396 (359 residues), 467.3 bits, see alignment E=5.5e-144 PF01094: ANF_receptor" amino acids 60 to 333 (274 residues), 30.7 bits, see alignment E=2.7e-11

Best Hits

KEGG orthology group: K01999, branched-chain amino acid transport system substrate-binding protein (inferred from 94% identity to vei:Veis_4910)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (397 amino acids)

>GFF3464 Urea ABC transporter, substrate-binding protein UrtA (Variovorax sp. SCN45)
MTNAFNRRQIVKTGGSMIVLGAAGGVAGIASAQDGNTVKLGLLHSLSGTIAIAEASLVDA
EKLAIEEINAAGGVMGKKIEAVVEDGASENPVFAEKARKLLERDKVAAIIGCYTSASRKA
LLPVLNQAKGLLFYPTYYEGQEQDKRVFYPSQEATQSVIAAVEWMAREKGKSFFLVGSDY
IYPRTCNKIAKPAIAKAGGKVLGEEYAPLGHTEFSSIINKIKAAKPDCIYSTVVGGSNVA
FYKQLRAAGLDGAKQVLLSTVVSENEIDGIGKDNAAGYYACMGYFQSIKSPANEKFVKAF
KAKYGQDRVIGDPMEVAYNSVYLWKLAVEKAKSFDVDKVTAAAAGVEIEAPEGTVRIHAT
NHHVWKKVRVGRARPDGQFDIVWESPQLVEPNPFPKV