Protein Info for GFF3456 in Variovorax sp. SCN45

Annotation: Possible regulatory protein similar to urea ABC transporter, substrate binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 PF13458: Peripla_BP_6" amino acids 6 to 346 (341 residues), 228.2 bits, see alignment E=2.4e-71 PF13433: Peripla_BP_5" amino acids 7 to 370 (364 residues), 495.7 bits, see alignment E=8.8e-153

Best Hits

KEGG orthology group: K01999, branched-chain amino acid transport system substrate-binding protein (inferred from 95% identity to vei:Veis_4902)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (384 amino acids)

>GFF3456 Possible regulatory protein similar to urea ABC transporter, substrate binding protein (Variovorax sp. SCN45)
VADKDPIRVGILYSETGVTSTIGLSQLQGALLAIEEINAAGGVEGREIVAVRYDPQSNPA
RYAQLAEKLIVQDRVNVIFGCYMSSSRKAVIPVIEKWNKLLFYPTLYEGFEYSGNVIYTG
AAPNQNSVQLAEFMTTNFGARVYLIGSDYIYPYESNRIMGELVMQRPGSEKLGERYVALD
AGERDYRAIMDDIRDKRPDFIFSTVVGDSTASLYRAYAEAGFDPKTMPIASLTTSEAEIS
QMGHGVATGHFTAAPYFQSIDSAANRRCLAMLRARFGDGCVPNLCWEASYFQMHIFANAY
RQAGSDGIAEILPYILGSEFDAPQGLVKIDPTNHHTCLYPRIGRVDSHGQFTIVRQATRA
VYPDPYLVTHSLGDWTAKLDTLEA