Protein Info for PS417_17645 in Pseudomonas simiae WCS417

Annotation: RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 10 to 461 (452 residues), 348.9 bits, see alignment E=2.3e-108 PF02321: OEP" amino acids 59 to 253 (195 residues), 72.6 bits, see alignment E=2e-24 amino acids 279 to 459 (181 residues), 85.4 bits, see alignment E=2.3e-28

Best Hits

KEGG orthology group: None (inferred from 91% identity to pfs:PFLU3979)

Predicted SEED Role

"Outer membrane pyoverdine eflux protein" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UBV2 at UniProt or InterPro

Protein Sequence (467 amino acids)

>PS417_17645 RND transporter (Pseudomonas simiae WCS417)
MNKRSLYLPALCVLLSACTGNPPAVDSGIAPPAAWQFAERDAAQATNQQWWTQFGSPQLN
RLIDQARRDSFDVAAATARVHQAQASAVIAGAPLLPEVKLNLTTSRQKLLRGPGGPDLDA
SQSDDTVDNFGANLTASYEVDFWGGRAAARDSALHNVRASEFDQATVELTLLSSVADRYA
QTLAAQQRQQIAELNLANARNVLDLVQTRYDAGSATALELAQQKSLVASQQRQLPLIQQL
AEESRITLAALLGQPVQALNLGTEPFQALTWPAIGAGLPSQLLSRRPDIAKAEAQLAAAQ
ADVTVARAAMLPAITLGATLGSDAYKAVDVLRSPYYTLTAGLVAPIFNNGRLSAERDKAR
ARQDELLQTYRGAIINGFADVEKSLSSITRLDQQREWQSEELQQAQTAFQIAESRYQAGA
EDLLTVLETQRTLYTAQDQNVQLRLSRLQASIALYKALGGGWQTQIR