Protein Info for GFF3437 in Variovorax sp. SCN45

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 transmembrane" amino acids 22 to 42 (21 residues), see Phobius details amino acids 49 to 67 (19 residues), see Phobius details amino acids 87 to 108 (22 residues), see Phobius details amino acids 122 to 142 (21 residues), see Phobius details amino acids 178 to 203 (26 residues), see Phobius details amino acids 209 to 230 (22 residues), see Phobius details amino acids 242 to 271 (30 residues), see Phobius details amino acids 332 to 351 (20 residues), see Phobius details amino acids 363 to 380 (18 residues), see Phobius details amino acids 386 to 410 (25 residues), see Phobius details amino acids 420 to 443 (24 residues), see Phobius details PF11299: DUF3100" amino acids 34 to 272 (239 residues), 285.9 bits, see alignment E=1.2e-89

Best Hits

KEGG orthology group: None (inferred from 59% identity to axy:AXYL_00518)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (447 amino acids)

>GFF3437 putative membrane protein (Variovorax sp. SCN45)
MTSAASAPLSAAAPCGASGKLKLALVTLAIVAGAELIGPVQFSVGPGKVALLPMLWALLI
AAVWGVAQRRLPGAVRVATAEQSLAGGLLNAGLLLFVVKLGLTVGAALPQVKQAGWALLF
QEFGHALGTLALGLPLALLLGIKREAVGATFSVGREGNLVIIGEKYGMASPEGRGVLAEY
ITGTVLGALFIAVLAGFVASLHIFDPRSLAMGAGVGSGSLMAAALGAIAAQQPAEMLPQL
TAIAAASNLLTTVAGFYFTLFLSLPLCSWLYGKLEPVLGRFSKRGAQDAAGTGAVSQVSL
AHGGAMSLRDTLVAWAVVGGGVLIGNSLTYKVPLLVSLEGMAAVVVIALVVEGIKRLVPR
LPMVLMLSVVATLAGIPGLFPFSDALIAITGKLNFLAFTTPVLALAGFSVAKDLPVFRQL
GWRIVVVSLTATAGTFLGATLIAEFFH