Protein Info for GFF343 in Sphingobium sp. HT1-2

Annotation: Glycosyl transferase, group 1 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 PF13579: Glyco_trans_4_4" amino acids 21 to 195 (175 residues), 49.9 bits, see alignment E=1.4e-16 PF13439: Glyco_transf_4" amino acids 22 to 202 (181 residues), 58.6 bits, see alignment E=2.4e-19 PF00534: Glycos_transf_1" amino acids 214 to 367 (154 residues), 128.9 bits, see alignment E=4.7e-41 PF13692: Glyco_trans_1_4" amino acids 220 to 356 (137 residues), 113.1 bits, see alignment E=4e-36 PF13524: Glyco_trans_1_2" amino acids 236 to 372 (137 residues), 41.5 bits, see alignment E=3.9e-14 PF20706: GT4-conflict" amino acids 282 to 371 (90 residues), 28.5 bits, see alignment E=2.4e-10

Best Hits

KEGG orthology group: None (inferred from 84% identity to sjp:SJA_C1-33020)

Predicted SEED Role

"Glycosyl transferase, group 1 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (389 amino acids)

>GFF343 Glycosyl transferase, group 1 family protein (Sphingobium sp. HT1-2)
MTLNVLTLSTLFPDMSRPNFGVFVERQARELASRPDVSVTVVAPIGMPPWPLSRAGRYAP
LRALPPKERWKDLTVYRPTFPIIPKFGGRTNVLTMTRAILPLVKRLHAQTPFDVIDASFF
FPDGPVAQRLSKALGIPYSVKARGADIHHWGTQRGTKKMVKRAADGAAGLLAVSAAMRRS
MGRMGIDADKIRVHYTGVDLDRFEIADRDQAKAALGFEGPLILCVGALIPRKGQDILVRA
LPQLPGTTLLLAGQGQYRRMLENLAQELGVERRIGFLGSVPHDRLPRLYAAADVMALPSE
SEGLANAWVESLACGTPIVITDVGGARELLDRPEAGRIVDREPEALAEAIADILADPPER
DAVRAAALRFTWTANGDALLDHLTGMARG