Protein Info for GFF3428 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 746 PF02839: CBM_5_12" amino acids 300 to 335 (36 residues), 28.3 bits, see alignment (E = 2.2e-10) PF16893: fn3_2" amino acids 356 to 441 (86 residues), 30.7 bits, see alignment E=4.3e-11 PF00041: fn3" amino acids 358 to 439 (82 residues), 42.3 bits, see alignment E=1.1e-14

Best Hits

KEGG orthology group: None (inferred from 60% identity to xau:Xaut_0879)

Predicted SEED Role

"Chitinase (EC 3.2.1.14)" in subsystem Chitin and N-acetylglucosamine utilization (EC 3.2.1.14)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.14

Use Curated BLAST to search for 3.2.1.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (746 amino acids)

>GFF3428 hypothetical protein (Xanthobacter sp. DMC5)
MANVTLTWTWGLHEVDTFNPTTDVIDFGWVSADYVTIAEVAGSVVISLPSTEQTYTLQGV
TLADLSIANIVANDGSIFAAWTAALADSHPVTSQTVTIAADYGTNTLVNFNPSQDVLDFG
TLTAADFALAEVDGSAVIFLPASQQTYILVGVSLDDLTLANIHGTVGSTFTEWNTELALD
HDTTAPSPTYHAPTTYTVGWQWNTQTILDFDPVQDKLDFGWLLPQDFTIAEVDGSVIIVL
AGNQRTITLEGVSLANLSTDNITAQTSLVTNAWADAIAAATGGSSGSGGTLPVIDDAPDW
SASTVYTAGDQVTVGHVVYEAKWWTLGSDPEHDYGPAGSGHVWTKVGYADLIPVAPETPD
DFHAATTTDTSVTLTWDAAEIFGVGTISAYDIYQDGTLVGSTSERSFKVAGLSADTSYSF
TIVAHDEAGASSASTPVSVTTDAAGSHAADGQVFSPYIDLWLASSQQTDIVQAVADADVS
AVTLAFIVGTGTNEIGWAGVGSIASDTLADGTSISGVIADLKANGVDVTISFGGGHAEEP
ALYFSSSTALAAAYQSVIDTYGVTSLDFDIEGAALTNDAASALRNAALVALEADNPDLSI
SFTLPVLPTGLTQDDLDLLAAAHAAGVEIDTVNIMVMNYGTENDTGDMGQDAIDAAEATI
AQLQTLGIDAKVGITPMVGINDVQSEVFTLQDAQQLVDFADGNDHIASLSMWSLGRDHGD
VVGHLTYANSGVAQDDWDFAKIFATV