Protein Info for PS417_17490 in Pseudomonas simiae WCS417

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 TIGR03864: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system" amino acids 3 to 237 (235 residues), 352.4 bits, see alignment E=5.4e-110 PF00005: ABC_tran" amino acids 21 to 161 (141 residues), 105.8 bits, see alignment E=1.4e-34

Best Hits

KEGG orthology group: K09687, antibiotic transport system ATP-binding protein (inferred from 80% identity to pfl:PFL_2207)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U114 at UniProt or InterPro

Protein Sequence (246 amino acids)

>PS417_17490 ABC transporter ATP-binding protein (Pseudomonas simiae WCS417)
MNALEVRDVSFAYGARQALCEVSFSLTPGRFAALLGPNGAGKSTLIALLTRLYDLQSGDI
RVGGHSLREAPRAALTQLGVVFQQNTLDLDLSVEQNLRYHAALHGLSRRQTDLRVAAELA
RQVLTERRREKVRELNGGHRRRVEIARALLHEPRLLLLDEASVGLDPASRLALNQHVRSL
CLEHGISVLWTTHLLDEVQADDALMILHQGRLVARGQVDALIAQQGGDLGSVFARLTRPT
TTGAAA