Protein Info for PS417_17465 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF00805: Pentapeptide" amino acids 41 to 79 (39 residues), 42.4 bits, see alignment 5.9e-15 amino acids 76 to 108 (33 residues), 34.1 bits, see alignment 2.4e-12 amino acids 119 to 143 (25 residues), 22.5 bits, see alignment (E = 1e-08) amino acids 126 to 165 (40 residues), 38 bits, see alignment 1.4e-13 amino acids 166 to 205 (40 residues), 37.6 bits, see alignment 1.9e-13 PF13599: Pentapeptide_4" amino acids 43 to 111 (69 residues), 36.2 bits, see alignment E=9.3e-13 amino acids 120 to 187 (68 residues), 34.1 bits, see alignment E=4.1e-12

Best Hits

KEGG orthology group: None (inferred from 80% identity to pfl:PFL_2215)

Predicted SEED Role

"pentapeptide repeat family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TYX6 at UniProt or InterPro

Protein Sequence (215 amino acids)

>PS417_17465 hypothetical protein (Pseudomonas simiae WCS417)
MNYLPLLLLLSLPLAHADDGDDAPLIINGCTLAERSQCPGANLKGADLRNQDLSKMNLAG
ADLREADLRHANLDLANLEKAQLQGANLTRASLQQANLRLANFSGATLMAIQGWGLFAQG
AQFENANLSAAYLQFARLSGAKMHKANLRAADLEMTWLSKADLQGADLSDANLQEAKFGE
SNLEQATLTGSRQHYANFQDANMEGCQDCPTTWDR