Protein Info for GFF3409 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 transmembrane" amino acids 10 to 35 (26 residues), see Phobius details amino acids 67 to 90 (24 residues), see Phobius details amino acids 100 to 124 (25 residues), see Phobius details amino acids 144 to 170 (27 residues), see Phobius details amino acids 196 to 223 (28 residues), see Phobius details amino acids 252 to 272 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 83 to 283 (201 residues), 55.4 bits, see alignment E=3.4e-19

Best Hits

Swiss-Prot: 100% identical to POTB_SALTS: Spermidine/putrescine transport system permease protein PotB (potB) from Salmonella typhimurium (strain SL1344)

KEGG orthology group: K11071, spermidine/putrescine transport system permease protein (inferred from 99% identity to ses:SARI_01764)

MetaCyc: 97% identical to spermidine preferential ABC transporter membrane subunit PotB (Escherichia coli K-12 substr. MG1655)
ABC-25-RXN [EC: 7.6.2.11, 7.6.2.16]; 7.6.2.11 [EC: 7.6.2.11, 7.6.2.16]

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.11 or 7.6.2.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (287 amino acids)

>GFF3409 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYARLLDPL
YFEVLLHSLNMALIATLSCLVLGYPFAWFLAKLPEKIRPLLLFLLIVPFWTNSLIRIYGL
KIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPL
LEAARDLGASKMQTFIRIIIPLTMPGIVAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVI
KVQFLNIRDWPFGAATSITLTIVMGLMLLIYWRASRLLNKKVSDISD