Protein Info for PS417_17410 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 492 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 42 to 79 (38 residues), see Phobius details amino acids 95 to 120 (26 residues), see Phobius details amino acids 139 to 158 (20 residues), see Phobius details amino acids 164 to 182 (19 residues), see Phobius details amino acids 189 to 211 (23 residues), see Phobius details amino acids 231 to 254 (24 residues), see Phobius details amino acids 288 to 306 (19 residues), see Phobius details amino acids 313 to 331 (19 residues), see Phobius details amino acids 338 to 359 (22 residues), see Phobius details amino acids 381 to 417 (37 residues), see Phobius details amino acids 426 to 446 (21 residues), see Phobius details amino acids 466 to 489 (24 residues), see Phobius details PF00939: Na_sulph_symp" amino acids 16 to 492 (477 residues), 429.4 bits, see alignment E=2.1e-132 TIGR00785: transporter, divalent anion:Na+ symporter (DASS) family" amino acids 31 to 486 (456 residues), 230.5 bits, see alignment E=1.7e-72 PF03600: CitMHS" amino acids 52 to 432 (381 residues), 87.4 bits, see alignment E=1e-28

Best Hits

Swiss-Prot: 73% identical to MEMP_CUPNH: Membrane protein (H16_A0667) from Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)

KEGG orthology group: None (inferred from 95% identity to pfs:PFLU3958)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UN27 at UniProt or InterPro

Protein Sequence (492 amino acids)

>PS417_17410 membrane protein (Pseudomonas simiae WCS417)
MNAPATTAASFKLPLGLVIGVLVMVGVLLLPLPADLPVAGQRMLAILAFAVVVWITEAVS
YEASAIMITSLMAFLLGTAPSLQDPTHLIGSSPAISMALTGFSNPALALVAGALFIAAAM
THTGLDRRIALVTLTRVGTSTRGILLGAIAVTILLSLVVPSATARSACVVPIMMGVVAAF
GVDKRSNIAAGLMIVVAQGTSIWNVGIQTAAAQNLLTVGFMDKMLGQRVSWIDWLIAGAP
WAVIMSAVLLFLVIKLLPPETDSIPGGKEAVAQSLVDIGPMTGPQKRLLTVSVLLLLAWA
TEGRLHPFDTTSTTYAGLVFLLLPGVGVMTWKDVQSRIPWGTVIVFGVGISLGTALLTTQ
AGQWLGSQVVAHTGLDQVGPLGVFAILGAFLIVIHLGFASATALTSALLPILIAVLQTLP
GEFNRLGMTMLLGFVMSYGFILPINAPQNMVCLGTGTFTARQFAKVGILVTLIGYGLMLV
FAATYWSWLGWI