Protein Info for PS417_17375 in Pseudomonas simiae WCS417

Annotation: C4-dicarboxylate ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 175 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 51 to 70 (20 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 131 to 154 (24 residues), see Phobius details PF04290: DctQ" amino acids 28 to 153 (126 residues), 82.7 bits, see alignment E=1.1e-27

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfs:PFLU3952)

Predicted SEED Role

"TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U5L2 at UniProt or InterPro

Protein Sequence (175 amino acids)

>PS417_17375 C4-dicarboxylate ABC transporter (Pseudomonas simiae WCS417)
MKNLLLRINDRIYMTCIWVAGLSVLGVALIIPWGIFARYVLGTGSSWPEPTAILLMLVFT
FIGAAASYRAGAHMSVAMVTDRLPPRQRQIIGVVSQLLMGTICLFMTIWGTKLCLSTWNQ
FMSAIPTLRVGITYMPIPIGGLLTLIFVVEKLLLGDQSNRRVVRFDLVEESEGAA