Protein Info for GFF3393 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 989 PF13700: DUF4158" amino acids 6 to 165 (160 residues), 147 bits, see alignment E=4.9e-47 PF01526: DDE_Tnp_Tn3" amino acids 576 to 962 (387 residues), 486.3 bits, see alignment E=5.8e-150

Best Hits

KEGG orthology group: None (inferred from 49% identity to oan:Oant_4776)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (989 amino acids)

>GFF3393 hypothetical protein (Sphingobium sp. HT1-2)
MARRRLLTGDERRRLFDPPVQETAIIGHYTLSAEDVELVGRRYGPANRLGLAAQIALMRH
PGFGLQPEIGLPDVILQYLAAQLFVDPSSFSAYGQRAQTRTDHADLVARYLGIRPFRRGD
LALALNLAAQAAEYTDRGEPIVRALMVGLKGERFILPSGDTLERAGLAGRARARKAAAAA
IVEGLSSAELTRLDELVINNPDFGMTPLAWLRNFEEAPTAANINGLLERLRYVRGIGIHP
VVGGAIPEFRFAQFVREGGVAPAFLLSDYSVNRRRATLTAAVIDLEARLADAAIQMFDRL
IGGMFTRARRGRERRYQDSIQSVGQLMRLFGATITALDEAVQNGGDPLELIDEAVGWHRL
VAAKAQVDALADLAGEDALVTATERYATLRRFSPAFLDAFTFKASGTGTALIKAIDVIRD
ANTRKSRDLPDGVPLPFPNRQWKRLITESGRIDRRRYEIAIMATLRDRLRAGDVWIEGTR
NYQRFDAYLLGRRDAAKVADVLPFDSNAASYLADRARNLDWRLRRFAKQLKTNKLEGVSL
ERDRLKLQQMPPVTPPEAEALDRKLDTLLPRVRITELLLEVAERTGFLNAFRDLRSGKEH
DNPSTVLAAILADGTNLGLERMANASEGVSYAQLAWTHNWYLSPENYQAALAMIISAHHE
LPFARHWGAGTSSSSDGQFFRSGRSRSGAADVNAKYGAEPGVKIYSHLSDHFASFGSRIM
SATAGEAPYVLDGLVLGAGNLPLHEHYTDTGGATDHVFALCHLLGFRFAPRLRDIGDRKL
GSIAAPSTYKGIENLMGRTIKTAAIEADWDDIVRIVASIKDGTVAPSVILRKLAAYKRQN
RLDFALAELGRIERTLFTLDWLEQPELRRACQAGLNKGEARHTLAAAIYTNRQGRFTDRS
LENQEFRASGLNLLIAAISYWNTVYLDRAAQHLNAVGTTFDAALLAHLSPMGWAHISLTG
DYLWEQARRLPAGEFHPLNEPMARLKRVA