Protein Info for PS417_17350 in Pseudomonas simiae WCS417

Annotation: copper resistance protein CopD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 49 to 69 (21 residues), see Phobius details amino acids 89 to 109 (21 residues), see Phobius details amino acids 115 to 136 (22 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 217 to 239 (23 residues), see Phobius details amino acids 260 to 280 (21 residues), see Phobius details PF05425: CopD" amino acids 180 to 275 (96 residues), 47.9 bits, see alignment E=7.7e-17

Best Hits

KEGG orthology group: K07245, putative copper resistance protein D (inferred from 88% identity to pfs:PFLU3947)

Predicted SEED Role

"Copper resistance protein D" in subsystem Copper homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U3F0 at UniProt or InterPro

Protein Sequence (285 amino acids)

>PS417_17350 copper resistance protein CopD (Pseudomonas simiae WCS417)
MATLLVLCRFLHFIVVLLMFGSCAFRPWLLGAETQPVLDRQLDRITRGLAWLGVFSGVAW
LLLITASMAGRWDAALQPATVQLVLGKTFFGQVWVWHLLLNLLLLIVLIKPWRALRLAVI
ALLLGTLAPVGHGAMLDGLSGQLLILNQVVHLACVGAWLGGLLLLVLILRHSPPLALEPI
LRRFSGVGYGLVAGLLVTGLINVRVLTGQLWPTPLFQGFALILLIKVLLVLGMLALALLN
RLRIERCEARLGTLKASVMLEWLLGVSAVAAVSLLGTLPPMVMAG