Protein Info for GFF3388 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 71 to 90 (20 residues), see Phobius details amino acids 99 to 116 (18 residues), see Phobius details amino acids 122 to 140 (19 residues), see Phobius details amino acids 150 to 167 (18 residues), see Phobius details amino acids 180 to 211 (32 residues), see Phobius details amino acids 231 to 251 (21 residues), see Phobius details amino acids 303 to 321 (19 residues), see Phobius details amino acids 332 to 353 (22 residues), see Phobius details amino acids 359 to 379 (21 residues), see Phobius details amino acids 391 to 406 (16 residues), see Phobius details PF13231: PMT_2" amino acids 103 to 212 (110 residues), 39 bits, see alignment E=4.9e-14

Best Hits

KEGG orthology group: None (inferred from 84% identity to xau:Xaut_3318)

Predicted SEED Role

"Bll3066 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (542 amino acids)

>GFF3388 hypothetical protein (Xanthobacter sp. DMC5)
MSFLEIERRPGAIADACALVLIAGVAVIAALTFSDYGLGWDDFTHSQYGDLLYSYFSSGL
TQRKVFSFVNLYYYGGGFDLAAAAIAKALPFVEVFDVRRLLGGFVGIVGFVLVWRTGRRL
AGPWGGLAAVALLMICPLYYGHMFMNAKDAPFAVAVAGVLYACVRAFDEFPQPSPRTVTF
FGLFLGLAIGTRVLGLLCGVYLAAAIAFVLAVECVRLGIKPALLRTLRFTGLLMLGLPLA
YFVLGMVWPWGVVEPLNPLMALKYYSHFWEVPWREMFEGRPILVPDMPRTYVPTLFSVQM
PELFLGLAVAGAAGAIVSAFVGKDTPSKRARLVLIVTAAAFPVLLTVVTRPVMYNGIRHF
VFVTPALALLGGYAASWLWQKAQALPRLAQGAVAATFAVGLAVPAVDFHNLHPYEYTYYN
HFVGGIKGADDLFMLDYWGLAFKQATEELDEYVEQHRRTLPQGRKLRVAVCGPHFAAAAE
LGPRYETTYDSSNADFYMRLGEFYCADVKAPLLVKVEREGVTYATVYDVRGRPFPSVFAA
GQ