Protein Info for GFF3383 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 PF05872: HerA_C" amino acids 70 to 598 (529 residues), 754.2 bits, see alignment E=6.6e-231 PF01935: DUF87" amino acids 78 to 270 (193 residues), 31.9 bits, see alignment E=1.5e-11

Best Hits

KEGG orthology group: K06915, (no description) (inferred from 77% identity to xau:Xaut_3313)

Predicted SEED Role

"ATPase component BioM of energizing module of biotin ECF transporter" in subsystem Biotin biosynthesis or ECF class transporters

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (600 amino acids)

>GFF3383 hypothetical protein (Xanthobacter sp. DMC5)
MVKSPGTNSGTSPEQSAPANAAPPAGPWSRTSVPRTSSAAPSGGRAPAPESDGRILVGRS
FLGRSEAAATHTKSKDEYLTLRLANRHGLVTGATGTGKTVTLQVLAEGFSRAGVPVFAAD
IKGDLSGVAAQGEAKDFLLKRAEEVGITYTPDSFPVIFWDMFGEQGHPVRATISEMGPLL
LARLMGLNETQEGVLNIVFRIADEQGLLLLDLKDLRAMLAHVSANAATLTATYGNVSAQS
VGAIQRQLLVLENQGADKFFGEPALDIADIMRVDRSGYGTINILAADKLMGSPRLYACFL
LWLLSELFERLPEVGDPDKPKLVFFFDEAHLLFNEAPKALLEKVEQVVRLIRSKGVGVYF
VTQNPLDVPETVLAQLGNRVQHALRAFTPRDQKAVKAAAETFRPNPDLDTAKAIMELGKG
EALVSMLEGNGIPSMVERTLICPPSGRIGPLLPAERAAILAKSPVGHLYDTPVDRESAFE
MLQARAEEKAQPDAEEAAPSSGGGSILDTILGGVLGTATGTPKVEPVPRGGAPRQGSTAP
RVPTTAGRSAGTGSTAPRPSTRMSTTEVVVRQVARSVATQVGSQLGKAILRGILGSISKR