Protein Info for GFF3375 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 69 to 89 (21 residues), see Phobius details amino acids 100 to 121 (22 residues), see Phobius details amino acids 127 to 147 (21 residues), see Phobius details amino acids 182 to 203 (22 residues), see Phobius details amino acids 224 to 245 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 79 to 248 (170 residues), 68 bits, see alignment E=4.6e-23

Best Hits

KEGG orthology group: None (inferred from 61% identity to rpa:RPA3383)

Predicted SEED Role

"ABC-type nitrate/sulfonate/bicarbonate transport system, permease component" in subsystem Alkanesulfonate assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (255 amino acids)

>GFF3375 hypothetical protein (Xanthobacter sp. DMC5)
MQSDISGWRRWGFMAIGPLALFLIWYGVFAAGLVTPKLLPSPVRTLQAIWENMGTGLGQD
FLYTLQRTLHAFALAAILGVPLGIVVGASEKFYRSIEFLIDFFRSTPATAMFPLFMIIFG
LGDFSKISVAAFAAFLVILFNVAYGVMHARPTRMLAARVMGASRLRVFKDVMFYESLPQT
FIGLRTGVSMALVVIVVAEMFIGSDNGLGKRIIDSQITFDLPQLYGTILVSGILGYGLNL
LFLATEKLLVHWAGR