Protein Info for PS417_17175 in Pseudomonas simiae WCS417

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 PF12625: Arabinose_bd" amino acids 25 to 207 (183 residues), 129.6 bits, see alignment E=2.3e-41 PF12833: HTH_18" amino acids 260 to 336 (77 residues), 54.8 bits, see alignment E=1.5e-18 PF00165: HTH_AraC" amino acids 297 to 336 (40 residues), 27.6 bits, see alignment 3.7e-10

Best Hits

KEGG orthology group: None (inferred from 96% identity to pfs:PFLU3917)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UHB6 at UniProt or InterPro

Protein Sequence (342 amino acids)

>PS417_17175 AraC family transcriptional regulator (Pseudomonas simiae WCS417)
MKPVRLGDLSVGFVHALADAIHSHGLDPQPLLLQYGLDPARLAEAGARLSIPRYMRLGHA
AIQLTGDPGLGLRMGQLSRLSQGGLAGVTAAQAPNVREAARALTRFEALYGSNYRGQSSF
VEDAEGAWLRFYSISPYNAYNRFVVDSIIAGWLQQLSSLAQQPVQAQRIDIEFEAPEYSD
QYSVLGDVHFGAEANQLRLNQQTLALRNPQHCPSTWNLLLQLCERELVQLTRTRSLRERI
TRLLGPMLNGGREPDLEEVAARLKLPTWTLRRKLADEGTQFRAILNDTRRDLAMTYIRDT
ELAFGEIAYLLGFASAQAFQRAFRRWNNQTPGEFRRSQRHSA